Quantitative Proteomic and Interaction Network Analysis of Cisplatin Resistance in HeLa Cells

por Chavez, Juan D., Hoopmann, Michael R., Weisbrod, Chad R., Takara, Kohji, Bruce, James E.
Publicado 2011

DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics

por Midha, Mukul K., Campbell, David S., Kapil, Charu, Kusebauch, Ulrike, Hoopmann, Michael R., Bader, Samuel L., Moritz, Robert L.
Publicado 2020

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

por Lewis, Steven, Csordas, Attila, Killcoyne, Sarah, Hermjakob, Henning, Hoopmann, Michael R, Moritz, Robert L, Deutsch, Eric W, Boyle, John
Publicado 2012

Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling

por Dean, Matthew D, Findlay, Geoffrey D, Hoopmann, Michael R, Wu, Christine C, MacCoss, Michael J, Swanson, Willie J, Nachman, Michael W
Publicado 2011

A redox-active crosslinker reveals an essential and inhibitable oxidative folding network in the endoplasmic reticulum of malaria parasites

por Cobb, David W., Kudyba, Heather M., Villegas, Alejandra, Hoopmann, Michael R., Baptista, Rodrigo P., Bruton, Baylee, Krakowiak, Michelle, Moritz, Robert L., Muralidharan, Vasant
Publicado 2021

Discovery and Visualization of Uncharacterized Drug–Protein Adducts Using Mass Spectrometry

por Riffle, Michael, Hoopmann, Michael R., Jaschob, Daniel, Zhong, Guo, Moritz, Robert L., MacCoss, Michael J., Davis, Trisha N., Isoherranen, Nina, Zelter, Alex
Publicado 2022

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

por Zelter, Alex, Bonomi, Massimiliano, Kim, Jae ook, Umbreit, Neil T., Hoopmann, Michael R., Johnson, Richard, Riffle, Michael, Jaschob, Daniel, MacCoss, Michael J., Moritz, Robert L., Davis, Trisha N.
Publicado 2015

Crux: Rapid Open Source Protein Tandem Mass Spectrometry Analysis

por McIlwain, Sean, Tamura, Kaipo, Kertesz-Farkas, Attila, Grant, Charles E., Diament, Benjamin, Frewen, Barbara, Howbert, J. Jeffry, Hoopmann, Michael R., Käll, Lukas, Eng, Jimmy K., MacCoss, Michael J., Noble, William Stafford
Publicado 2014

Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector

por Kumar, Sudhir, Haile, Meseret T., Hoopmann, Michael R., Tran, Linh T., Michaels, Samantha A., Morrone, Seamus R., Ojo, Kayode K., Reynolds, Laura M., Kusebauch, Ulrike, Vaughan, Ashley M., Moritz, Robert L., Kappe, Stefan H. I., Swearingen, Kristian E.
Publicado 2021

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado 2015

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

por Maixner, Frank, Sarhan, Mohamed S., Huang, Kun D., Tett, Adrian, Schoenafinger, Alexander, Zingale, Stefania, Blanco-Míguez, Aitor, Manghi, Paolo, Cemper-Kiesslich, Jan, Rosendahl, Wilfried, Kusebauch, Ulrike, Morrone, Seamus R., Hoopmann, Michael R., Rota-Stabelli, Omar, Rattei, Thomas, Moritz, Robert L., Oeggl, Klaus, Segata, Nicola, Zink, Albert, Reschreiter, Hans, Kowarik, Kerstin
Publicado 2021

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado 2014

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

por Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Publicado 2020

Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers

por Watanabe, Kengo, Wilmanski, Tomasz, Baloni, Priyanka, Robinson, Max, Garcia, Gonzalo G., Hoopmann, Michael R., Midha, Mukul K., Baxter, David H., Maes, Michal, Morrone, Seamus R., Crebs, Kelly M., Kapil, Charu, Kusebauch, Ulrike, Wiedrick, Jack, Lapidus, Jodi, Pflieger, Lance, Lausted, Christopher, Roach, Jared C., Glusman, Gwênlyn, Cummings, Steven R., Schork, Nicholas J., Price, Nathan D., Hood, Leroy, Miller, Richard A., Moritz, Robert L., Rappaport, Noa
Publicado 2023

Author Correction: Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers

por Watanabe, Kengo, Wilmanski, Tomasz, Baloni, Priyanka, Robinson, Max, Garcia, Gonzalo G., Hoopmann, Michael R., Midha, Mukul K., Baxter, David H., Maes, Michal, Morrone, Seamus R., Crebs, Kelly M., Kapil, Charu, Kusebauch, Ulrike, Wiedrick, Jack, Lapidus, Jodi, Pflieger, Lance, Lausted, Christopher, Roach, Jared C., Glusman, Gwênlyn, Cummings, Steven R., Schork, Nicholas J., Price, Nathan D., Hood, Leroy, Miller, Richard A., Moritz, Robert L., Rappaport, Noa
Publicado 2023

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado 2020

Structural surfaceomics reveals an AML-specific conformation of integrin β(2) as a CAR T cellular therapy target

por Mandal, Kamal, Wicaksono, Gianina, Yu, Clinton, Adams, Jarrett J., Hoopmann, Michael R., Temple, William C., Izgutdina, Adila, Escobar, Bonell Patiño, Gorelik, Maryna, Ihling, Christian H., Nix, Matthew A., Naik, Akul, Xie, William H., Hübner, Juwita, Rollins, Lisa A., Reid, Sandy M., Ramos, Emilio, Kasap, Corynn, Steri, Veronica, Serrano, Juan Antonio Camara, Salangsang, Fernando, Phojanakong, Paul, McMillan, Melanie, Gavallos, Victor, Leavitt, Andrew D., Logan, Aaron C., Rooney, Cliona M., Eyquem, Justin, Sinz, Andrea, Huang, Benjamin J., Stieglitz, Elliot, Smith, Catherine C., Moritz, Robert L., Sidhu, Sachdev S., Huang, Lan, Wiita, Arun P.
Publicado 2023

The Iceman’s Last Meal Consisted of Fat, Wild Meat, and Cereals

por Maixner, Frank, Turaev, Dmitrij, Cazenave-Gassiot, Amaury, Janko, Marek, Krause-Kyora, Ben, Hoopmann, Michael R., Kusebauch, Ulrike, Sartain, Mark, Guerriero, Gea, O’Sullivan, Niall, Teasdale, Matthew, Cipollini, Giovanna, Paladin, Alice, Mattiangeli, Valeria, Samadelli, Marco, Tecchiati, Umberto, Putzer, Andreas, Palazoglu, Mine, Meissen, John, Lösch, Sandra, Rausch, Philipp, Baines, John F., Kim, Bum Jin, An, Hyun-Joo, Gostner, Paul, Egarter-Vigl, Eduard, Malfertheiner, Peter, Keller, Andreas, Stark, Robert W., Wenk, Markus, Bishop, David, Bradley, Daniel G., Fiehn, Oliver, Engstrand, Lars, Moritz, Robert L., Doble, Philip, Franke, Andre, Nebel, Almut, Oeggl, Klaus, Rattei, Thomas, Grimm, Rudolf, Zink, Albert
Publicado 2018

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

por Iacobucci, Claudio, Piotrowski, Christine, Aebersold, Ruedi, Amaral, Bruno C., Andrews, Philip, Bernfur, Katja, Borchers, Christoph, Brodie, Nicolas I., Bruce, James E., Cao, Yong, Chaignepain, Stéphane, Chavez, Juan D., Claverol, Stéphane, Cox, Jürgen, Davis, Trisha, Degliesposti, Gianluca, Dong, Meng-Qiu, Edinger, Nufar, Emanuelsson, Cecilia, Gay, Marina, Götze, Michael, Gomes-Neto, Francisco, Gozzo, Fabio C., Gutierrez, Craig, Haupt, Caroline, Heck, Albert J. R., Herzog, Franz, Huang, Lan, Hoopmann, Michael R., Kalisman, Nir, Klykov, Oleg, Kukačka, Zdeněk, Liu, Fan, MacCoss, Michael J., Mechtler, Karl, Mesika, Ravit, Moritz, Robert L., Nagaraj, Nagarjuna, Nesati, Victor, Neves-Ferreira, Ana G. C., Ninnis, Robert, Novák, Petr, O’Reilly, Francis J., Pelzing, Matthias, Petrotchenko, Evgeniy, Piersimoni, Lolita, Plasencia, Manolo, Pukala, Tara, Rand, Kasper D., Rappsilber, Juri, Reichmann, Dana, Sailer, Carolin, Sarnowski, Chris P., Scheltema, Richard A., Schmidt, Carla, Schriemer, David C., Shi, Yi, Skehel, J. Mark, Slavin, Moriya, Sobott, Frank, Solis-Mezarino, Victor, Stephanowitz, Heike, Stengel, Florian, Stieger, Christian E., Trabjerg, Esben, Trnka, Michael, Vilaseca, Marta, Viner, Rosa, Xiang, Yufei, Yilmaz, Sule, Zelter, Alex, Ziemianowicz, Daniel, Leitner, Alexander, Sinz, Andrea
Publicado 2019