Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine Tissues

por Hornshøj, Henrik, Conley, Lene Nagstrup, Hedegaard, Jakob, Sørensen, Peter, Panitz, Frank, Bendixen, Christian
Publicado 2007

Comparative analysis of protein coding sequences from human, mouse and the domesticated pig

por Jørgensen, Frank Grønlund, Hobolth, Asger, Hornshøj, Henrik, Bendixen, Christian, Fredholm, Merete, Schierup, Mikkel Heide
Publicado 2005

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies

por Hornshøj, Henrik, Bendixen, Emøke, Conley, Lene N, Andersen, Pernille K, Hedegaard, Jakob, Panitz, Frank, Bendixen, Christian
Publicado 2009

Gene expression profiles in liver of pigs with extreme high and low levels of androstenone

por Moe, Maren, Lien, Sigbjørn, Bendixen, Christian, Hedegaard, Jakob, Hornshøj, Henrik, Berget, Ingunn, Meuwissen, Theo HE, Grindflek, Eli
Publicado 2008

Molecular characterisation of the early response in pigs to experimental infection with Actinobacillus pleuropneumoniae using cDNA microarrays

por Hedegaard, Jakob, Skovgaard, Kerstin, Mortensen, Shila, Sørensen, Peter, Jensen, Tim K, Hornshøj, Henrik, Bendixen, Christian, Heegaard, Peter MH
Publicado 2007

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs

por Jouffe, Vincent, Rowe, Suzanne, Liaubet, Laurence, Buitenhuis, Bart, Hornshøj, Henrik, SanCristobal, Magali, Mormède, Pierre, de Koning, DJ
Publicado 2009

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

por Bertl, Johanna, Guo, Qianyun, Juul, Malene, Besenbacher, Søren, Nielsen, Morten Muhlig, Hornshøj, Henrik, Pedersen, Jakob Skou, Hobolth, Asger
Publicado 2018

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

por Juul, Malene, Bertl, Johanna, Guo, Qianyun, Nielsen, Morten Muhlig, Świtnicki, Michał, Hornshøj, Henrik, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2017

A robust linkage map of the porcine autosomes based on gene-associated SNPs

por Vingborg, Rikke KK, Gregersen, Vivi R, Zhan, Bujie, Panitz, Frank, Høj, Anette, Sørensen, Kirsten K, Madsen, Lone B, Larsen, Knud, Hornshøj, Henrik, Wang, Xuefei, Bendixen, Christian
Publicado 2009

Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival

por Hornshøj, Henrik, Nielsen, Morten Muhlig, Sinnott-Armstrong, Nicholas A., Świtnicki, Michał P., Juul, Malene, Madsen, Tobias, Sallari, Richard, Kellis, Manolis, Ørntoft, Torben, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2018

DNA hypermethylation and differential gene expression associated with Klinefelter syndrome

por Skakkebæk, Anne, Nielsen, Morten Muhlig, Trolle, Christian, Vang, Søren, Hornshøj, Henrik, Hedegaard, Jakob, Wallentin, Mikkel, Bojesen, Anders, Hertz, Jens Michael, Fedder, Jens, Østergaard, John Rosendahl, Pedersen, Jakob Skou, Gravholt, Claus Højbjerg
Publicado 2018

Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing

por Wernersson, Rasmus, Schierup, Mikkel H, Jørgensen, Frank G, Gorodkin, Jan, Panitz, Frank, Stærfeldt, Hans-Henrik, Christensen, Ole F, Mailund, Thomas, Hornshøj, Henrik, Klein, Ami, Wang, Jun, Liu, Bin, Hu, Songnian, Dong, Wei, Li, Wei, Wong, Gane KS, Yu, Jun, Wang, Jian, Bendixen, Christian, Fredholm, Merete, Brunak, Søren, Yang, Huanming, Bolund, Lars
Publicado 2005

Analysis of the real EADGENE data set: Multivariate approaches and post analysis (Open Access publication)

por Sørensen, Peter, Bonnet, Agnès, Buitenhuis, Bart, Closset, Rodrigue, Déjean, Sébastien, Delmas, Céline, Duval, Mylène, Glass, Liz, Hedegaard, Jakob, Hornshøj, Henrik, Hulsegge, Ina, Jaffrézic, Florence, Jensen, Kirsty, Jiang, Li, de Koning, Dirk-Jan, Cao, Kim-Anh Lê, Nie, Haisheng, Petzl, Wolfram, Pool, Marco H, Robert-Granié, Christèle, San Cristobal, Magali, Lund, Mogens Sandø, van Schothorst, Evert M, Schuberth, Hans-Joachim, Seyfert, Hans-Martin, Tosser-Klopp, Gwenola, Waddington, David, Watson, Michael, Yang, Wei, Zerbe, Holm
Publicado 2007

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

por Gorodkin, Jan, Cirera, Susanna, Hedegaard, Jakob, Gilchrist, Michael J, Panitz, Frank, Jørgensen, Claus, Scheibye-Knudsen, Karsten, Arvin, Troels, Lumholdt, Steen, Sawera, Milena, Green, Trine, Nielsen, Bente J, Havgaard, Jakob H, Rosenkilde, Carina, Wang, Jun, Li, Heng, Li, Ruiqiang, Liu, Bin, Hu, Songnian, Dong, Wei, Li, Wei, Yu, Jun, Wang, Jian, Stærfeldt, Hans-Henrik, Wernersson, Rasmus, Madsen, Lone B, Thomsen, Bo, Hornshøj, Henrik, Bujie, Zhan, Wang, Xuegang, Wang, Xuefei, Bolund, Lars, Brunak, Søren, Yang, Huanming, Bendixen, Christian, Fredholm, Merete
Publicado 2007

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment

por Hedegaard, Jakob, Arce, Cristina, Bicciato, Silvio, Bonnet, Agnès, Buitenhuis, Bart, Collado-Romero, Melania, Conley, Lene N, SanCristobal, Magali, Ferrari, Francesco, Garrido, Juan J, Groenen, Martien AM, Hornshøj, Henrik, Hulsegge, Ina, Jiang, Li, Jiménez-Marín, Ángeles, Kommadath, Arun, Lagarrigue, Sandrine, Leunissen, Jack AM, Liaubet, Laurence, Neerincx, Pieter BT, Nie, Haisheng, Poel, Jan van der, Prickett, Dennis, Ramirez-Boo, María, Rebel, Johanna MJ, Robert-Granié, Christèle, Skarman, Axel, Smits, Mari A, Sørensen, Peter, Tosser-Klopp, Gwenola, Watson, Michael
Publicado 2009

The EADGENE Microarray Data Analysis Workshop (Open Access publication)

por de Koning, Dirk-Jan, Jaffrézic, Florence, Lund, Mogens Sandø, Watson, Michael, Channing, Caroline, Hulsegge, Ina, Pool, Marco H, Buitenhuis, Bart, Hedegaard, Jakob, Hornshøj, Henrik, Jiang, Li, Sørensen, Peter, Marot, Guillemette, Delmas, Céline, Cao, Kim-Anh Lê, San Cristobal, Magali, Baron, Michael D, Malinverni, Roberto, Stella, Alessandra, Brunner, Ronald M, Seyfert, Hans-Martin, Jensen, Kirsty, Mouzaki, Daphne, Waddington, David, Jiménez-Marín, Ángeles, Pérez-Alegre, Mónica, Pérez-Reinado, Eva, Closset, Rodrigue, Detilleux, Johanne C, Dovč, Peter, Lavrič, Miha, Nie, Haisheng, Janss, Luc
Publicado 2007

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (Open Access publication)

por Jaffrézic, Florence, de Koning, Dirk-Jan, Boettcher, Paul J, Bonnet, Agnès, Buitenhuis, Bart, Closset, Rodrigue, Déjean, Sébastien, Delmas, Céline, Detilleux, Johanne C, Dovč, Peter, Duval, Mylène, Foulley, Jean-Louis, Hedegaard, Jakob, Hornshøj, Henrik, Hulsegge, Ina, Janss, Luc, Jensen, Kirsty, Jiang, Li, Lavrič, Miha, Cao, Kim-Anh Lê, Lund, Mogens Sandø, Malinverni, Roberto, Marot, Guillemette, Nie, Haisheng, Petzl, Wolfram, Pool, Marco H, Robert-Granié, Christèle, San Cristobal, Magali, van Schothorst, Evert M, Schuberth, Hans-Joachim, Sørensen, Peter, Stella, Alessandra, Tosser-Klopp, Gwenola, Waddington, David, Watson, Michael, Yang, Wei, Zerbe, Holm, Seyfert, Hans-Martin
Publicado 2007

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

por Rheinbay, Esther, Nielsen, Morten Muhlig, Abascal, Federico, Wala, Jeremiah A., Shapira, Ofer, Tiao, Grace, Hornshøj, Henrik, Hess, Julian M., Juul, Randi Istrup, Lin, Ziao, Feuerbach, Lars, Sabarinathan, Radhakrishnan, Madsen, Tobias, Kim, Jaegil, Mularoni, Loris, Shuai, Shimin, Lanzós, Andrés, Herrmann, Carl, Maruvka, Yosef E., Shen, Ciyue, Amin, Samirkumar B., Bandopadhayay, Pratiti, Bertl, Johanna, Boroevich, Keith A., Busanovich, John, Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Craft, David, Dhingra, Priyanka, Diamanti, Klev, Fonseca, Nuno A., Gonzalez-Perez, Abel, Guo, Qianyun, Hamilton, Mark P., Haradhvala, Nicholas J., Hong, Chen, Isaev, Keren, Johnson, Todd A., Juul, Malene, Kahles, Andre, Kahraman, Abdullah, Kim, Youngwook, Komorowski, Jan, Kumar, Kiran, Kumar, Sushant, Lee, Donghoon, Lehmann, Kjong-Van, Li, Yilong, Liu, Eric Minwei, Lochovsky, Lucas, Park, Keunchil, Pich, Oriol, Roberts, Nicola D., Saksena, Gordon, Schumacher, Steven E., Sidiropoulos, Nikos, Sieverling, Lina, Sinnott-Armstrong, Nasa, Stewart, Chip, Tamborero, David, Tubio, Jose M. C., Umer, Husen M., Uusküla-Reimand, Liis, Wadelius, Claes, Wadi, Lina, Yao, Xiaotong, Zhang, Cheng-Zhong, Zhang, Jing, Haber, James E., Hobolth, Asger, Imielinski, Marcin, Kellis, Manolis, Lawrence, Michael S., von Mering, Christian, Nakagawa, Hidewaki, Raphael, Benjamin J., Rubin, Mark A., Sander, Chris, Stein, Lincoln D., Stuart, Joshua M., Tsunoda, Tatsuhiko, Wheeler, David A., Johnson, Rory, Reimand, Jüri, Gerstein, Mark, Khurana, Ekta, Campbell, Peter J., López-Bigas, Núria, Weischenfeldt, Joachim, Beroukhim, Rameen, Martincorena, Iñigo, Pedersen, Jakob Skou, Getz, Gad
Publicado 2020

Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

por Rheinbay, Esther, Nielsen, Morten Muhlig, Abascal, Federico, Wala, Jeremiah A., Shapira, Ofer, Tiao, Grace, Hornshøj, Henrik, Hess, Julian M., Juul, Randi Istrup, Lin, Ziao, Feuerbach, Lars, Sabarinathan, Radhakrishnan, Madsen, Tobias, Kim, Jaegil, Mularoni, Loris, Shuai, Shimin, Lanzós, Andrés, Herrmann, Carl, Maruvka, Yosef E., Shen, Ciyue, Amin, Samirkumar B., Bandopadhayay, Pratiti, Bertl, Johanna, Boroevich, Keith A., Busanovich, John, Carlevaro-Fita, Joana, Chakravarty, Dimple, Chan, Calvin Wing Yiu, Craft, David, Dhingra, Priyanka, Diamanti, Klev, Fonseca, Nuno A., Gonzalez-Perez, Abel, Guo, Qianyun, Hamilton, Mark P., Haradhvala, Nicholas J., Hong, Chen, Isaev, Keren, Johnson, Todd A., Juul, Malene, Kahles, Andre, Kahraman, Abdullah, Kim, Youngwook, Komorowski, Jan, Kumar, Kiran, Kumar, Sushant, Lee, Donghoon, Lehmann, Kjong-Van, Li, Yilong, Liu, Eric Minwei, Lochovsky, Lucas, Park, Keunchil, Pich, Oriol, Roberts, Nicola D., Saksena, Gordon, Schumacher, Steven E., Sidiropoulos, Nikos, Sieverling, Lina, Sinnott-Armstrong, Nasa, Stewart, Chip, Tamborero, David, Tubio, Jose M. C., Umer, Husen M., Uusküla-Reimand, Liis, Wadelius, Claes, Wadi, Lina, Yao, Xiaotong, Zhang, Cheng-Zhong, Zhang, Jing, Haber, James E., Hobolth, Asger, Imielinski, Marcin, Kellis, Manolis, Lawrence, Michael S., von Mering, Christian, Nakagawa, Hidewaki, Raphael, Benjamin J., Rubin, Mark A., Sander, Chris, Stein, Lincoln D., Stuart, Joshua M., Tsunoda, Tatsuhiko, Wheeler, David A., Johnson, Rory, Reimand, Jüri, Gerstein, Mark, Khurana, Ekta, Campbell, Peter J., López-Bigas, Núria, Weischenfeldt, Joachim, Beroukhim, Rameen, Martincorena, Iñigo, Pedersen, Jakob Skou, Getz, Gad
Publicado 2023

Analyses of pig genomes provide insight into porcine demography and evolution

por Groenen, Martien A. M., Archibald, Alan L., Uenishi, Hirohide, Tuggle, Christopher K., Takeuchi, Yasuhiro, Rothschild, Max F., Rogel-Gaillard, Claire, Park, Chankyu, Milan, Denis, Megens, Hendrik-Jan, Li, Shengting, Larkin, Denis M., Kim, Heebal, Frantz, Laurent A. F., Caccamo, Mario, Ahn, Hyeonju, Aken, Bronwen L., Anselmo, Anna, Anthon, Christian, Auvil, Loretta, Badaoui, Bouabid, Beattie, Craig W., Bendixen, Christian, Berman, Daniel, Blecha, Frank, Blomberg, Jonas, Bolund, Lars, Bosse, Mirte, Botti, Sara, Bujie, Zhan, Bystrom, Megan, Capitanu, Boris, Carvalho-Silva, Denise, Chardon, Patrick, Chen, Celine, Cheng, Ryan, Choi, Sang-Haeng, Chow, William, Clark, Richard C., Clee, Christopher, Crooijmans, Richard P. M. A., Dawson, Harry D., Dehais, Patrice, De Sapio, Fioravante, Dibbits, Bert, Drou, Nizar, Du, Zhi-Qiang, Eversole, Kellye, Fadista, João, Fairley, Susan, Faraut, Thomas, Faulkner, Geoffrey J., Fowler, Katie E., Fredholm, Merete, Fritz, Eric, Gilbert, James G. R., Giuffra, Elisabetta, Gorodkin, Jan, Griffin, Darren K., Harrow, Jennifer L., Hayward, Alexander, Howe, Kerstin, Hu, Zhi-Liang, Humphray, Sean J., Hunt, Toby, Hornshøj, Henrik, Jeon, Jin-Tae, Jern, Patric, Jones, Matthew, Jurka, Jerzy, Kanamori, Hiroyuki, Kapetanovic, Ronan, Kim, Jaebum, Kim, Jae-Hwan, Kim, Kyu-Won, Kim, Tae-Hun, Larson, Greger, Lee, Kyooyeol, Lee, Kyung-Tai, Leggett, Richard, Lewin, Harris A., Li, Yingrui, Liu, Wansheng, Loveland, Jane E., Lu, Yao, Lunney, Joan K., Ma, Jian, Madsen, Ole, Mann, Katherine, Matthews, Lucy, McLaren, Stuart, Morozumi, Takeya, Murtaugh, Michael P., Narayan, Jitendra, Truong Nguyen, Dinh, Ni, Peixiang, Oh, Song-Jung, Onteru, Suneel, Panitz, Frank, Park, Eung-Woo, Park, Hong-Seog, Pascal, Geraldine, Paudel, Yogesh, Perez-Enciso, Miguel, Ramirez-Gonzalez, Ricardo, Reecy, James M., Rodriguez-Zas, Sandra, Rohrer, Gary A., Rund, Lauretta, Sang, Yongming, Schachtschneider, Kyle, Schraiber, Joshua G., Schwartz, John, Scobie, Linda, Scott, Carol, Searle, Stephen, Servin, Bertrand, Southey, Bruce R., Sperber, Goran, Stadler, Peter, Sweedler, Jonathan V., Tafer, Hakim, Thomsen, Bo, Wali, Rashmi, Wang, Jian, Wang, Jun, White, Simon, Xu, Xun, Yerle, Martine, Zhang, Guojie, Zhang, Jianguo, Zhang, Jie, Zhao, Shuhong, Rogers, Jane, Churcher, Carol, Schook, Lawrence B.
Publicado 2012