Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)

por Howe, Adina, Chain, Patrick S. G.
Publicado 2015

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

por Williams, Ryan J., Howe, Adina, Hofmockel, Kirsten S.
Publicado 2014

Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

por Vital, Marius, Howe, Adina Chuang, Tiedje, James M.
Publicado 2014

RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids

por Dunivin, Taylor K., Choi, Jinlyung, Howe, Adina, Shade, Ashley
Publicado 2019

Imagining tomorrow's university in an era of open science

por Howe, Adina, Howe, Michael, Kaleita, Amy L., Raman, D. Raj
Publicado 2017

An Improved Approach to Identify Bacterial Pathogens to Human in Environmental Metagenome

por Yang, Jihoon, Howe, Adina, Lee, Jaejin, Yoo, Keunje, Park, Joonhong
Publicado 2020

Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil

por Howe, Adina, Yang, Fan, Williams, Ryan J., Meyer, Folker, Hofmockel, Kirsten S.
Publicado 2016

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

por Žifčáková, Lucia, Větrovský, Tomáš, Lombard, Vincent, Henrissat, Bernard, Howe, Adina, Baldrian, Petr
Publicado 2017

These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

por Zhang, Qingpeng, Pell, Jason, Canino-Koning, Rosangela, Howe, Adina Chuang, Brown, C. Titus
Publicado 2014

Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application

por Lopatto, Edward, Choi, Jinlyung, Colina, Alfredo, Ma, Lanying, Howe, Adina, Hinsa-Leasure, Shannon
Publicado 2019

Strategies for Building Computing Skills To Support Microbiome Analysis: a Five-Year Perspective from the EDAMAME Workshop

por Shade, Ashley, Dunivin, Taylor K., Choi, Jinlyung, Teal, Tracy K., Howe, Adina C.
Publicado 2019

Response of Total (DNA) and Metabolically Active (RNA) Microbial Communities in Miscanthus × Giganteus Cultivated Soil to Different Nitrogen Fertilization Rates

por Yang, Jihoon, Lee, Jaejin, Choi, Jinlyung, Ma, Lanying, Heaton, Emily A., Howe, Adina
Publicado 2022

Identification of Soil Microbes Capable of Utilizing Cellobiosan

por Lian, Jieni, Choi, Jinlyung, Tan, Yee Shiean, Howe, Adina, Wen, Zhiyou, Jarboe, Laura R.
Publicado 2016

Temporal Dynamics of Bacterial Communities in Soil and Leachate Water After Swine Manure Application

por Rieke, Elizabeth L., Soupir, Michelle L., Moorman, Thomas B., Yang, Fan, Howe, Adina C.
Publicado 2018

Catchment-scale export of antibiotic resistance genes and bacteria from an agricultural watershed in central Iowa

por Neher, Timothy P., Ma, Lanying, Moorman, Thomas B., Howe, Adina C., Soupir, Michelle L.
Publicado 2020

Seasonal activities of the phyllosphere microbiome of perennial crops

por Howe, Adina, Stopnisek, Nejc, Dooley, Shane K., Yang, Fan, Grady, Keara L., Shade, Ashley
Publicado 2023

Microbial assemblages and methanogenesis pathways impact methane production and foaming in manure deep-pit storages

por Yang, Fan, Andersen, Daniel S., Trabue, Steven, Kent, Angela D., Pepple, Laura M., Gates, Richard S., Howe, Adina S.
Publicado 2021

Impact of Swine and Cattle Manure Treatment on the Microbial Composition and Resistome of Soil and Drainage Water

por Colgan, Phil, Rieke, Elizabeth L., Nadeem, Khurram, Moorman, Thomas B., Soupir, Michelle L., Howe, Adina, Ricker, Nicole
Publicado 2022

Allelic Variation in Outer Membrane Protein A and Its Influence on Attachment of Escherichia coli to Corn Stover

por Liao, Chunyu, Liang, Xiao, Yang, Fan, Soupir, Michelle L., Howe, Adina C., Thompson, Michael L., Jarboe, Laura R.
Publicado 2017

Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance

por Choi, Jinlyung, Rieke, Elizabeth L, Moorman, Thomas B, Soupir, Michelle L, Allen, Heather K, Smith, Schuyler D, Howe, Adina
Publicado 2018