Large-scale comparative genomics to refine the organization of the global Salmonella enterica population structure

por Liu, Chao Chun, Hsiao, William W. L.
Publicado 2022

OntoTrek: 3D visualization of application ontology class hierarchies

por Dooley, Damion, Nguyen, Matthew H., Hsiao, William W. L.
Publicado 2023

Sequence database versioning for command line and Galaxy bioinformatics servers

por Dooley, Damion M., Petkau, Aaron J., Van Domselaar, Gary, Hsiao, William W.L.
Publicado 2016

Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands

por Hsiao, William W. L, Ung, Korine, Aeschliman, Dana, Bryan, Jenny, Finlay, B. Brett, Brinkman, Fiona S. L
Publicado 2005

Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance

por Griffiths, Emma, Dooley, Damion, Graham, Morag, Van Domselaar, Gary, Brinkman, Fiona S. L., Hsiao, William W. L.
Publicado 2017

The Association of Virulence Factors with Genomic Islands

por Ho Sui, Shannan J., Fedynak, Amber, Hsiao, William W. L., Langille, Morgan G. I., Brinkman, Fiona S. L.
Publicado 2009

Genome Sequences of the Mycobacterium tuberculosis H37Rv-ptkA Deletion Mutant and Its Parental Strain

por Tsui, Clement K. M., Wong, Dennis, Narula, Gagandeep, Gardy, Jennifer L., Hsiao, William W. H., Av-Gay, Yossef
Publicado 2017

MicrobeDB: a locally maintainable database of microbial genomic sequences

por Langille, Morgan G. I., Laird, Matthew R., Hsiao, William W. L., Chiu, Terry A., Eisen, Jonathan A., Brinkman, Fiona S. L.
Publicado 2012

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity

por Sahl, Jason W, Johnson, J Kristie, Harris, Anthony D, Phillippy, Adam M, Hsiao, William W, Thom, Kerri A, Rasko, David A
Publicado 2011

FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration

por Dooley, Damion M., Griffiths, Emma J., Gosal, Gurinder S., Buttigieg, Pier L., Hoehndorf, Robert, Lange, Matthew C., Schriml, Lynn M., Brinkman, Fiona S. L., Hsiao, William W. L.
Publicado 2018

Canadians’ opinions towards COVID-19 data-sharing: a national cross-sectional survey

por Savic Kallesoe, Sarah A, Rabbani, Tian, Gill, Erin E, Brinkman, Fiona, Griffiths, Emma J, Zawati, Ma'n, Liu, Hanshi, Palmour, Nicole, Joly, Yann, Hsiao, William W L
Publicado 2023

Addressing Privacy Concerns in Sharing Viral Sequences and Minimum Contextual Data in a Public Repository During the COVID-19 Pandemic

por Song, Lingqiao, Liu, Hanshi, Brinkman, Fiona S. L, Gill, Erin, Griffiths, Emma J., Hsiao, William W. L, Savić-Kallesøe, Sarah, Moreira, Sandrine, Van Domselaar, Gary, Zawati, Ma’n H., Joly, Yann
Publicado 2022

Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality

por Van Rossum, Thea, Peabody, Michael A., Uyaguari-Diaz, Miguel I., Cronin, Kirby I., Chan, Michael, Slobodan, Jared R., Nesbitt, Matthew J., Suttle, Curtis A., Hsiao, William W. L., Tang, Patrick K. C., Prystajecky, Natalie A., Brinkman, Fiona S. L.
Publicado 2015

The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information

por Gill, Ivan S., Griffiths, Emma J., Dooley, Damion, Cameron, Rhiannon, Savić Kallesøe, Sarah, John, Nithu Sara, Sehar, Anoosha, Gosal, Gurinder, Alexander, David, Chapel, Madison, Croxen, Matthew A., Delisle, Benjamin, Di Tullio, Rachelle, Gaston, Daniel, Duggan, Ana, Guthrie, Jennifer L., Horsman, Mark, Joshi, Esha, Kearny, Levon, Knox, Natalie, Lau, Lynette, LeBlanc, Jason J., Li, Vincent, Lyons, Pierre, MacKenzie, Keith, McArthur, Andrew G., Panousis, Emily M., Palmer, John, Prystajecky, Natalie, Smith, Kerri N., Tanner, Jennifer, Townend, Christopher, Tyler, Andrea, Van Domselaar, Gary, Hsiao, William W. L.
Publicado 2023

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database

por Alcock, Brian P, Raphenya, Amogelang R, Lau, Tammy T Y, Tsang, Kara K, Bouchard, Mégane, Edalatmand, Arman, Huynh, William, Nguyen, Anna-Lisa V, Cheng, Annie A, Liu, Sihan, Min, Sally Y, Miroshnichenko, Anatoly, Tran, Hiu-Ki, Werfalli, Rafik E, Nasir, Jalees A, Oloni, Martins, Speicher, David J, Florescu, Alexandra, Singh, Bhavya, Faltyn, Mateusz, Hernandez-Koutoucheva, Anastasia, Sharma, Arjun N, Bordeleau, Emily, Pawlowski, Andrew C, Zubyk, Haley L, Dooley, Damion, Griffiths, Emma, Maguire, Finlay, Winsor, Geoff L, Beiko, Robert G, Brinkman, Fiona S L, Hsiao, William W L, Domselaar, Gary V, McArthur, Andrew G
Publicado 2020

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

por Griffiths, Emma J, Timme, Ruth E, Mendes, Catarina Inês, Page, Andrew J, Alikhan, Nabil-Fareed, Fornika, Dan, Maguire, Finlay, Campos, Josefina, Park, Daniel, Olawoye, Idowu B, Oluniyi, Paul E, Anderson, Dominique, Christoffels, Alan, da Silva, Anders Gonçalves, Cameron, Rhiannon, Dooley, Damion, Katz, Lee S, Black, Allison, Karsch-Mizrachi, Ilene, Barrett, Tanya, Johnston, Anjanette, Connor, Thomas R, Nicholls, Samuel M, Witney, Adam A, Tyson, Gregory H, Tausch, Simon H, Raphenya, Amogelang R, Alcock, Brian, Aanensen, David M, Hodcroft, Emma, Hsiao, William W L, Vasconcelos, Ana Tereza R, MacCannell, Duncan R
Publicado 2022

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

por Alcock, Brian P, Huynh, William, Chalil, Romeo, Smith, Keaton W, Raphenya, Amogelang R, Wlodarski, Mateusz A, Edalatmand, Arman, Petkau, Aaron, Syed, Sohaib A, Tsang, Kara K, Baker, Sheridan J C, Dave, Mugdha, McCarthy, Madeline C, Mukiri, Karyn M, Nasir, Jalees A, Golbon, Bahar, Imtiaz, Hamna, Jiang, Xingjian, Kaur, Komal, Kwong, Megan, Liang, Zi Cheng, Niu, Keyu C, Shan, Prabakar, Yang, Jasmine Y J, Gray, Kristen L, Hoad, Gemma R, Jia, Baofeng, Bhando, Timsy, Carfrae, Lindsey A, Farha, Maya A, French, Shawn, Gordzevich, Rodion, Rachwalski, Kenneth, Tu, Megan M, Bordeleau, Emily, Dooley, Damion, Griffiths, Emma, Zubyk, Haley L, Brown, Eric D, Maguire, Finlay, Beiko, Robert G, Hsiao, William W L, Brinkman, Fiona S L, Van Domselaar, Gary, McArthur, Andrew G
Publicado 2022