Assessing models of speciation under different biogeographic scenarios; an empirical study using multi‐locus and RNA‐seq analyses

por Edwards, Taylor, Tollis, Marc, Hsieh, PingHsun, Gutenkunst, Ryan N., Liu, Zhen, Kusumi, Kenro, Culver, Melanie, Murphy, Robert W.
Publicado 2016

Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection

por Hsieh, PingHsun, Veeramah, Krishna R., Lachance, Joseph, Tishkoff, Sarah A., Wall, Jeffrey D., Hammer, Michael F., Gutenkunst, Ryan N.
Publicado 2016

Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies

por Hsieh, PingHsun, Woerner, August E., Wall, Jeffrey D., Lachance, Joseph, Tishkoff, Sarah A., Gutenkunst, Ryan N., Hammer, Michael F.
Publicado 2016

Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans

por Hsieh, PingHsun, Dang, Vy, Vollger, Mitchell R., Mao, Yafei, Huang, Tzu-Hsueh, Dishuck, Philip C., Baker, Carl, Cantsilieris, Stuart, Lewis, Alexandra P., Munson, Katherine M., Sorensen, Melanie, Welch, AnneMarie E., Underwood, Jason G., Eichler, Evan E.
Publicado 2021

Recurrent inversion toggling and great ape genome evolution

por Porubsky, David, Sanders, Ashley D., Höps, Wolfram, Hsieh, PingHsun, Sulovari, Arvis, Li, Ruiyang, Mercuri, Ludovica, Sorensen, Melanie, Murali, Shwetha C., Gordon, David, Cantsilieris, Stuart, Pollen, Alex A., Ventura, Mario, Antonacci, Francesca, Marschall, Tobias, Korbel, Jan O., Eichler, Evan E.
Publicado 2020

Increased mutation and gene conversion within human segmental duplications

por Vollger, Mitchell R., Dishuck, Philip C., Harvey, William T., DeWitt, William S., Guitart, Xavi, Goldberg, Michael E., Rozanski, Allison N., Lucas, Julian, Asri, Mobin, Munson, Katherine M., Lewis, Alexandra P., Hoekzema, Kendra, Logsdon, Glennis A., Porubsky, David, Paten, Benedict, Harris, Kelley, Hsieh, PingHsun, Eichler, Evan E.
Publicado 2023

An evolutionary driver of interspersed segmental duplications in primates

por Cantsilieris, Stuart, Sunkin, Susan M., Johnson, Matthew E., Anaclerio, Fabio, Huddleston, John, Baker, Carl, Dougherty, Max L., Underwood, Jason G., Sulovari, Arvis, Hsieh, PingHsun, Mao, Yafei, Catacchio, Claudia Rita, Malig, Maika, Welch, AnneMarie E., Sorensen, Melanie, Munson, Katherine M., Jiang, Weihong, Girirajan, Santhosh, Ventura, Mario, Lamb, Bruce T., Conlon, Ronald A., Eichler, Evan E.
Publicado 2020

LINE-1 retrotransposons drive human neuronal transcriptome complexity and functional diversification

por Garza, Raquel, Atacho, Diahann A. M., Adami, Anita, Gerdes, Patricia, Vinod, Meghna, Hsieh, PingHsun, Karlsson, Ofelia, Horvath, Vivien, Johansson, Pia A., Pandiloski, Ninoslav, Matas-Fuentes, Jon, Quaegebeur, Annelies, Kouli, Antonina, Sharma, Yogita, Jönsson, Marie E., Monni, Emanuela, Englund, Elisabet, Eichler, Evan E., Gale Hammell, Molly, Barker, Roger A., Kokaia, Zaal, Douse, Christopher H., Jakobsson, Johan
Publicado 2023

The structure, function and evolution of a complete human chromosome 8

por Logsdon, Glennis A., Vollger, Mitchell R., Hsieh, PingHsun, Mao, Yafei, Liskovykh, Mikhail A., Koren, Sergey, Nurk, Sergey, Mercuri, Ludovica, Dishuck, Philip C., Rhie, Arang, de Lima, Leonardo G., Dvorkina, Tatiana, Porubsky, David, Harvey, William T., Mikheenko, Alla, Bzikadze, Andrey V., Kremitzki, Milinn, Graves-Lindsay, Tina A., Jain, Chirag, Hoekzema, Kendra, Murali, Shwetha C., Munson, Katherine M., Baker, Carl, Sorensen, Melanie, Lewis, Alexandra M., Surti, Urvashi, Gerton, Jennifer L., Larionov, Vladimir, Ventura, Mario, Miga, Karen H., Phillippy, Adam M., Eichler, Evan E.
Publicado 2021

A high-quality bonobo genome refines the analysis of hominid evolution

por Mao, Yafei, Catacchio, Claudia R., Hillier, LaDeana W., Porubsky, David, Li, Ruiyang, Sulovari, Arvis, Fernandes, Jason D., Montinaro, Francesco, Gordon, David S., Storer, Jessica M., Haukness, Marina, Fiddes, Ian T., Murali, Shwetha Canchi, Dishuck, Philip C., Hsieh, PingHsun, Harvey, William T., Audano, Peter A., Mercuri, Ludovica, Piccolo, Ilaria, Antonacci, Francesca, Munson, Katherine M., Lewis, Alexandra P., Baker, Carl, Underwood, Jason G., Hoekzema, Kendra, Huang, Tzu-Hsueh, Sorensen, Melanie, Walker, Jerilyn A., Hoffman, Jinna, Thibaud-Nissen, Françoise, Salama, Sofie R., Pang, Andy W. C., Lee, Joyce, Hastie, Alex R., Paten, Benedict, Batzer, Mark A., Diekhans, Mark, Ventura, Mario, Eichler, Evan E.
Publicado 2021