Specificity of the E. coli LysR-Type Transcriptional Regulators

por Knapp, Gwendowlyn S., Hu, James C.
Publicado 2010

Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12

por Wu, Peter I-Fan, Ross, Curtis, Siegele, Deborah A, Hu, James C
Publicado 2020

GONUTS: the Gene Ontology Normal Usage Tracking System

por Renfro, Daniel P., McIntosh, Brenley K., Venkatraman, Anand, Siegele, Deborah A., Hu, James C.
Publicado 2012

Phenotypic Associations Among Cell Cycle Genes in Saccharomyces cerevisiae

por Bermudez, Rosa M., Wu, Peter I-Fan, Callerame, Deanna, Hammer, Staci, Hu, James C., Polymenis, Michael
Publicado 2020

Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations

por Holland, Steven C., Holland, LaRinda A., Smith, Matthew F., Lee, Mihyun B., Hu, James C., Lim, Efrem S.
Publicado 2023

Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation

por Ramsey, Jolene, Rasche, Helena, Maughmer, Cory, Criscione, Anthony, Mijalis, Eleni, Liu, Mei, Hu, James C., Young, Ry, Gill, Jason J.
Publicado 2020

Phenotype annotation with the ontology of microbial phenotypes (OMP)

por Siegele, Deborah A., LaBonte, Sandra A., Wu, Peter I-Fan, Chibucos, Marcus C., Nandendla, Suvarna, Giglio, Michelle G., Hu, James C.
Publicado 2019

An ontology for microbial phenotypes

por Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G
Publicado 2014

EcoliWiki: a wiki-based community resource for Escherichia coli

por McIntosh, Brenley K., Renfro, Daniel P., Knapp, Gwendowlyn S., Lairikyengbam, Chanchala R., Liles, Nathan M., Niu, Lili, Supak, Amanda M., Venkatraman, Anand, Zweifel, Adrienne E., Siegele, Deborah A., Hu, James C.
Publicado 2012

ECO, the Evidence & Conclusion Ontology: community standard for evidence information

por Giglio, Michelle, Tauber, Rebecca, Nadendla, Suvarna, Munro, James, Olley, Dustin, Ball, Shoshannah, Mitraka, Elvira, Schriml, Lynn M, Gaudet, Pascale, Hobbs, Elizabeth T, Erill, Ivan, Siegele, Deborah A, Hu, James C, Mungall, Chris, Chibucos, Marcus C
Publicado 2019

An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli

por Nehring, Ralf B., Gu, Franklin, Lin, Hsin-Yu, Gibson, Janet L., Blythe, Martin J., Wilson, Ray, Bravo Núñez, María Angélica, Hastings, P. J., Louis, Edward J., Frisch, Ryan L., Hu, James C., Rosenberg, Susan M.
Publicado 2016

The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology

por Rajagopala, Seesandra V, Yamamoto, Natsuko, Zweifel, Adrienne E, Nakamichi, Tomoko, Huang, Hsi-Kuang, Mendez-Rios, Jorge David, Franca-Koh, Jonathan, Boorgula, Meher Preethi, Fujita, Kazutoshi, Suzuki, Ken-ichirou, Hu, James C, Wanner, Barry L, Mori, Hirotada, Uetz, Peter
Publicado 2010

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools

por Hu, James C., Sherlock, Gavin, Siegele, Deborah A., Aleksander, Suzanne A., Ball, Catherine A., Demeter, Janos, Gouni, Sushanth, Holland, Timothy A., Karp, Peter D., Lewis, John E., Liles, Nathan M., McIntosh, Brenley K., Mi, Huaiyu, Muruganujan, Anushya, Wymore, Farrell, Thomas, Paul D.
Publicado 2014

Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA

por Smith, Matthew F., Holland, Steven C., Lee, Mihyun B., Hu, James C., Pham, Nghia C., Sullins, Regan A., Holland, LaRinda A., Mu, Tianchen, Thomas, Alexis W., Fitch, Remington, Driver, Erin M., Halden, Rolf U., Villegas-Gold, Michelle, Sanders, Sheri, Krauss, Jennifer L., Nordstrom, Lora, Mulrow, Mary, White, Michael, Murugan, Vel, Lim, Efrem S.
Publicado 2023

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

por Ramsey, Jolene, McIntosh, Brenley, Renfro, Daniel, Aleksander, Suzanne A., LaBonte, Sandra, Ross, Curtis, Zweifel, Adrienne E., Liles, Nathan, Farrar, Shabnam, Gill, Jason J., Erill, Ivan, Ades, Sarah, Berardini, Tanya Z., Bennett, Jennifer A., Brady, Siobhan, Britton, Robert, Carbon, Seth, Caruso, Steven M., Clements, Dave, Dalia, Ritu, Defelice, Meredith, Doyle, Erin L., Friedberg, Iddo, Gurney, Susan M. R., Hughes, Lee, Johnson, Allison, Kowalski, Jason M., Li, Donghui, Lovering, Ruth C., Mans, Tamara L., McCarthy, Fiona, Moore, Sean D., Murphy, Rebecca, Paustian, Timothy D., Perdue, Sarah, Peterson, Celeste N., Prüß, Birgit M., Saha, Margaret S., Sheehy, Robert R., Tansey, John T., Temple, Louise, Thorman, Alexander William, Trevino, Saul, Vollmer, Amy Cheng, Walbot, Virginia, Willey, Joanne, Siegele, Deborah A., Hu, James C.
Publicado 2021