Robust discovery of gene regulatory networks from single-cell gene expression data by Causal Inference Using Composition of Transactions

por Shojaee, Abbas, Huang, Shao-shan Carol
Publicado 2023

SteinerNet: a web server for integrating ‘omic’ data to discover hidden components of response pathways

por Tuncbag, Nurcan, McCallum, Scott, Huang, Shao-shan Carol, Fraenkel, Ernest
Publicado 2012

Response to Perspective : “Separation anxiety: An analysis of ethylene-induced cleavage of EIN2”

por Qiao, Hong, Shen, Zhouxin, Huang, Shao-shan Carol, Schmitz, Robert J., Urich, Mark A., Briggs, Steven P., Ecker, Joseph R.
Publicado 2013

Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors

por Li, Miaomiao, Yao, Tao, Lin, Wanru, Hinckley, Will E., Galli, Mary, Muchero, Wellington, Gallavotti, Andrea, Chen, Jin-Gui, Huang, Shao-shan Carol
Publicado 2023

Big Data to the Bench: Transcriptome Analysis for Undergraduates

por Procko, Carl, Morrison, Steven, Dunar, Courtney, Mills, Sara, Maldonado, Brianna, Cockrum, Carlee, Peters, Nathan Emmanuel, Huang, Shao-shan Carol, Chory, Joanne
Publicado 2019

Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens

por Ursu, Oana, Gosline, Sara J. C., Beeharry, Neil, Fink, Lauren, Bhattacharjee, Vikram, Huang, Shao-shan Carol, Zhou, Yan, Yen, Tim, Fraenkel, Ernest
Publicado 2017

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling

por Huang, Shao-shan Carol, Clarke, David C., Gosline, Sara J. C., Labadorf, Adam, Chouinard, Candace R., Gordon, William, Lauffenburger, Douglas A., Fraenkel, Ernest
Publicado 2013

CrY2H-seq: a massively-multiplexed assay for deep coverage interactome mapping

por Wanamaker, Shelly A., Garza, Renee M., MacWilliams, Andrew, Nery, Joseph R., Bartlett, Anna, Castanon, Rosa, Goubil, Adeline, Feeney, Joseph, O’Malley, Ronan, Huang, Shao-shan Carol, Zhang, Zhuzhu Z., Galli, Mary, Ecker, Joseph R.
Publicado 2017

First Plant Cell Atlas symposium report

por Rice, Selena L., Lazarus, Elena, Anderton, Christopher, Birnbaum, Kenneth, Brophy, Jennifer, Cole, Benjamin, Dickel, Diane, Ehrhardt, David, Fahlgren, Noah, Frank, Margaret, Haswell, Elizabeth, Huang, Shao‐shan Carol, Leiboff, Samuel, Libault, Marc, Otegui, Marisa S., Provart, Nicholas, Uhrig, R. Glen, Rhee, Seung Y.
Publicado 2022

Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways

por Yin, Lingling, Zander, Mark, Huang, Shao-shan Carol, Xie, Mingtang, Song, Liang, Saldierna Guzmán, J. Paola, Hann, Elizabeth, Shanbhag, Bhuvana K., Ng, Sophia, Jain, Siddhartha, Janssen, Bart J., Clark, Natalie M., Walley, Justin W., Beddoe, Travis, Bar-Joseph, Ziv, Lewsey, Mathew G., Ecker, Joseph R.
Publicado 2023

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

por Chang, Katherine Noelani, Zhong, Shan, Weirauch, Matthew T, Hon, Gary, Pelizzola, Mattia, Li, Hai, Huang, Shao-shan Carol, Schmitz, Robert J, Urich, Mark A, Kuo, Dwight, Nery, Joseph R, Qiao, Hong, Yang, Ally, Jamali, Abdullah, Chen, Huaming, Ideker, Trey, Ren, Bing, Bar-Joseph, Ziv, Hughes, Timothy R, Ecker, Joseph R
Publicado 2013

Vision, challenges and opportunities for a Plant Cell Atlas

por Jha, Suryatapa Ghosh, Borowsky, Alexander T, Cole, Benjamin J, Fahlgren, Noah, Farmer, Andrew, Huang, Shao-shan Carol, Karia, Purva, Libault, Marc, Provart, Nicholas J, Rice, Selena L, Saura-Sanchez, Maite, Agarwal, Pinky, Ahkami, Amir H, Anderton, Christopher R, Briggs, Steven P, Brophy, Jennifer AN, Denolf, Peter, Di Costanzo, Luigi F, Exposito-Alonso, Moises, Giacomello, Stefania, Gomez-Cano, Fabio, Kaufmann, Kerstin, Ko, Dae Kwan, Kumar, Sagar, Malkovskiy, Andrey V, Nakayama, Naomi, Obata, Toshihiro, Otegui, Marisa S, Palfalvi, Gergo, Quezada-Rodríguez, Elsa H, Singh, Rajveer, Uhrig, R Glen, Waese, Jamie, Van Wijk, Klaas, Wright, R Clay, Ehrhardt, David W, Birnbaum, Kenneth D, Rhee, Seung Y
Publicado 2021