Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor

por Laing, Emma, Sidhu, Khushwant, Hubbard, Simon J
Publicado 2008

Addressing Statistical Biases in Nucleotide-Derived Protein Databases for Proteogenomic Search Strategies

por Blakeley, Paul, Overton, Ian M., Hubbard, Simon J.
Publicado 2012

Sequence Search Algorithms for Single Pass Sequence Identification: Does One Size Fit All?

por Woodwark, K. Cara, Hubbard, Simon J., Oliver, Stephen G.
Publicado 2001

Analysis of gene expression in operons of Streptomyces coelicolor

por Laing, Emma, Mersinias, Vassilis, Smith, Colin P, Hubbard, Simon J
Publicado 2006

A kingdom-specific protein domain HMM library for improved annotation of fungal genomes

por Alam, Intikhab, Hubbard, Simon J, Oliver, Stephen G, Rattray, Magnus
Publicado 2007

Computational phosphoproteomics: From identification to localization

por Lee, Dave C H, Jones, Andrew R, Hubbard, Simon J
Publicado 2015

Cytosolic aspartate aminotransferase moonlights as a ribosome-binding modulator of Gcn2 activity during oxidative stress

por Crawford, Robert A, Ashe, Mark P, Hubbard, Simon J, Pavitt, Graham D
Publicado 2022

Yeast Protein Kinase A Isoforms: A Means of Encoding Specificity in the Response to Diverse Stress Conditions?

por Creamer, Declan R., Hubbard, Simon J., Ashe, Mark P., Grant, Chris M.
Publicado 2022

Understanding the Role of Yeast Yme1 in Mitochondrial Function Using Biochemical and Proteomics Analyses

por Kan, Kwan Ting, Nelson, Michael G., Grant, Chris M., Hubbard, Simon J., Lu, Hui
Publicado 2022

Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network in Saccharomyces cerevisiae

por Jarnuczak, Andrew F., Eyers, Claire E., Schwartz, Jean‐Marc, Grant, Christopher M., Hubbard, Simon J.
Publicado 2015

An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ(TM)

por Siepen, Jennifer A, Swainston, Neil, Jones, Andrew R, Hart, Sarah R, Hermjakob, Henning, Jones, Philip, Hubbard, Simon J
Publicado 2007

Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells

por Llewellyn, Jack, Mallikarjun, Venkatesh, Appleton, Ellen, Osipova, Maria, Gilbert, Hamish T. J., Richardson, Stephen M., Hubbard, Simon J., Swift, Joe
Publicado 2023

Dynamic Acclimation to High Light in Arabidopsis thaliana Involves Widespread Reengineering of the Leaf Proteome

por Miller, Matthew A. E., O’Cualain, Ronan, Selley, Julian, Knight, David, Karim, Mohd F., Hubbard, Simon J., Johnson, Giles N.
Publicado 2017

Glycolytic flux in Saccharomyces cerevisiae is dependent on RNA polymerase III and its negative regulator Maf1

por Szatkowska, Roza, Garcia-Albornoz, Manuel, Roszkowska, Katarzyna, Holman, Stephen W., Furmanek, Emil, Hubbard, Simon J., Beynon, Robert J., Adamczyk, Malgorzata
Publicado 2019

Paralogous translation factors target distinct mRNAs to differentially regulate tolerance to oxidative stress in yeast

por Cunningham, Joanne, Sfakianos, Aristeidis P, Kritsiligkou, Paraskevi, Kershaw, Christopher J, Whitmarsh, Alan J, Hubbard, Simon J, Ashe, Mark P, Grant, Chris M
Publicado 2023

PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns

por McLaughlin, Thomas, Siepen, Jennifer A., Selley, Julian, Lynch, Jennifer A., Lau, King Wai, Yin, Hujun, Gaskell, Simon J., Hubbard, Simon J.
Publicado 2006

Absolute protein quantification of the yeast chaperome under conditions of heat shock

por Mackenzie, Rebecca J., Lawless, Craig, Holman, Stephen W., Lanthaler, Karin, Beynon, Robert J., Grant, Chris M., Hubbard, Simon J., Eyers, Claire E.
Publicado 2016

Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast

por Lawless, Craig, Pearson, Richard D, Selley, Julian N, Smirnova, Julia B, Grant, Christopher M, Ashe, Mark P, Pavitt, Graham D, Hubbard, Simon J
Publicado 2009

Integrated multi-omics reveals common properties underlying stress granule and P-body formation

por Kershaw, Christopher J., Nelson, Michael G., Lui, Jennifer, Bates, Christian P., Jennings, Martin D., Hubbard, Simon J., Ashe, Mark P., Grant, Chris M.
Publicado 2021

Quantitative analysis of chaperone network throughput in budding yeast

por Brownridge, Philip, Lawless, Craig, Payapilly, Aishwarya B, Lanthaler, Karin, Holman, Stephen W, Harman, Victoria M, Grant, Christopher M, Beynon, Robert J, Hubbard, Simon J
Publicado 2013