NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence

por Down, Thomas A., Hubbard, Tim J. P.
Publicado 2005

Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme

por Koohy, Hashem, Down, Thomas A., Hubbard, Tim J.
Publicado 2013

Dalliance: interactive genome viewing on the web

por Down, Thomas A., Piipari, Matias, Hubbard, Tim J. P.
Publicado 2011

SISYPHUS—structural alignments for proteins with non-trivial relationships

por Andreeva, Antonina, Prlić, Andreas, Hubbard, Tim J. P., Murzin, Alexey G.
Publicado 2007

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

por Down, Thomas A, Bergman, Casey M, Su, Jing, Hubbard, Tim J. P
Publicado 2007

iMotifs: an integrated sequence motif visualization and analysis environment

por Piipari, Matias, Down, Thomas A., Saini, Harpreet, Enright, Anton, Hubbard, Tim J.P.
Publicado 2010

Analysis of diagnoses extracted from electronic health records in a large mental health case register

por Kovalchuk, Yevgeniya, Stewart, Robert, Broadbent, Matthew, Hubbard, Tim J. P., Dobson, Richard J. B.
Publicado 2017

Automated PDF highlighting to support faster curation of literature for Parkinson’s and Alzheimer’s disease

por Wu, Honghan, Oellrich, Anika, Girges, Christine, de Bono, Bernard, Hubbard, Tim J.P., Dobson, Richard J.B.
Publicado 2017

Characterisation of mental health conditions in social media using Informed Deep Learning

por Gkotsis, George, Oellrich, Anika, Velupillai, Sumithra, Liakata, Maria, Hubbard, Tim J. P., Dobson, Richard J. B., Dutta, Rina
Publicado 2017

Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning

por Gkotsis, George, Oellrich, Anika, Velupillai, Sumithra, Liakata, Maria, Hubbard, Tim J. P., Dobson, Richard J. B., Dutta, Rina
Publicado 2017

Data growth and its impact on the SCOP database: new developments

por Andreeva, Antonina, Howorth, Dave, Chandonia, John-Marc, Brenner, Steven E., Hubbard, Tim J. P., Chothia, Cyrus, Murzin, Alexey G.
Publicado 2008

Assessment of transcript reconstruction methods for RNA-seq

por Steijger, Tamara, Abril, Josep F, Engström, Pär G, Kokocinski, Felix, Hubbard, Tim J, Guigó, Roderic, Harrow, Jennifer, Bertone, Paul
Publicado 2013

Systematic evaluation of spliced alignment programs for RNA-seq data

por Engström, Pär G, Steijger, Tamara, Sipos, Botond, Grant, Gregory R, Kahles, André, Rätsch, Gunnar, Goldman, Nick, Hubbard, Tim J, Harrow, Jennifer, Guigó, Roderic, Bertone, Paul
Publicado 2013

An interactive genome browser of association results from the UK10K cohorts project

por Geihs, Matthias, Yan, Ying, Walter, Klaudia, Huang, Jie, Memari, Yasin, Min, Josine L., Mead, Daniel, Hubbard, Tim J., Timpson, Nicholas J., Down, Thomas A., Soranzo, Nicole
Publicado 2015

Pharmacogenomic testing in paediatrics: Clinical implementation strategies

por Barker, Charlotte I. S., Groeneweg, Gabriella, Maitland‐van der Zee, Anke H., Rieder, Michael J., Hawcutt, Daniel B., Hubbard, Tim J., Swen, Jesse J., Carleton, Bruce C.
Publicado 2022

The GENCODE pseudogene resource

por Pei, Baikang, Sisu, Cristina, Frankish, Adam, Howald, Cédric, Habegger, Lukas, Mu, Xinmeng Jasmine, Harte, Rachel, Balasubramanian, Suganthi, Tanzer, Andrea, Diekhans, Mark, Reymond, Alexandre, Hubbard, Tim J, Harrow, Jennifer, Gerstein, Mark B
Publicado 2012

The GENCODE exome: sequencing the complete human exome

por Coffey, Alison J, Kokocinski, Felix, Calafato, Maria S, Scott, Carol E, Palta, Priit, Drury, Eleanor, Joyce, Christopher J, LeProust, Emily M, Harrow, Jen, Hunt, Sarah, Lehesjoki, Anna-Elina, Turner, Daniel J, Hubbard, Tim J, Palotie, Aarno
Publicado 2011

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

por Howald, Cédric, Tanzer, Andrea, Chrast, Jacqueline, Kokocinski, Felix, Derrien, Thomas, Walters, Nathalie, Gonzalez, Jose M., Frankish, Adam, Aken, Bronwen L., Hourlier, Thibaut, Vogel, Jan-Hinnerk, White, Simon, Searle, Stephen, Harrow, Jennifer, Hubbard, Tim J., Guigó, Roderic, Reymond, Alexandre
Publicado 2012

Large-Scale Mutagenesis in p19(ARF)- and p53-Deficient Mice Identifies Cancer Genes and Their Collaborative Networks

por Uren, Anthony G., Kool, Jaap, Matentzoglu, Konstantin, de Ridder, Jeroen, Mattison, Jenny, van Uitert, Miranda, Lagcher, Wendy, Sie, Daoud, Tanger, Ellen, Cox, Tony, Reinders, Marcel, Hubbard, Tim J., Rogers, Jane, Jonkers, Jos, Wessels, Lodewyk, Adams, David J., van Lohuizen, Maarten, Berns, Anton
Publicado 2008

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

por Derrien, Thomas, Johnson, Rory, Bussotti, Giovanni, Tanzer, Andrea, Djebali, Sarah, Tilgner, Hagen, Guernec, Gregory, Martin, David, Merkel, Angelika, Knowles, David G., Lagarde, Julien, Veeravalli, Lavanya, Ruan, Xiaoan, Ruan, Yijun, Lassmann, Timo, Carninci, Piero, Brown, James B., Lipovich, Leonard, Gonzalez, Jose M., Thomas, Mark, Davis, Carrie A., Shiekhattar, Ramin, Gingeras, Thomas R., Hubbard, Tim J., Notredame, Cedric, Harrow, Jennifer, Guigó, Roderic
Publicado 2012