Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

por Hughey, Jacob J.
Publicado 2017

Robust meta-analysis of gene expression using the elastic net

por Hughey, Jacob J., Butte, Atul J.
Publicado 2015

Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans

por Hughey, Jacob J., Butte, Atul J.
Publicado 2016

LimoRhyde: A Flexible Approach for Differential Analysis of Rhythmic Transcriptome Data

por Singer, Jordan M., Hughey, Jacob J.
Publicado 2018

Releasing a preprint is associated with more attention and citations for the peer-reviewed article

por Fu, Darwin Y, Hughey, Jacob J
Publicado 2019

The risks of using the chi-square periodogram to estimate the period of biological rhythms

por Tackenberg, Michael C., Hughey, Jacob J.
Publicado 2021

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

por Schoenbachler, Joshua L., Hughey, Jacob J.
Publicado 2021

The seeker R package: simplified fetching and processing of transcriptome data

por Schoenbachler, Joshua L., Hughey, Jacob J.
Publicado 2022

Evidence for widespread dysregulation of circadian clock progression in human cancer

por Shilts, Jarrod, Chen, Guanhua, Hughey, Jacob J.
Publicado 2018

The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants

por Aref, Layla, Bastarache, Lisa, Hughey, Jacob J
Publicado 2022

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

por Hughey, Jacob J., Hastie, Trevor, Butte, Atul J.
Publicado 2016

Sex Inclusion in Transcriptome Studies of Daily Rhythms

por Obodo, Dora, Outland, Elliot H., Hughey, Jacob J.
Publicado 2022

LimoRhyde2: genomic analysis of biological rhythms based on effect sizes

por Obodo, Dora, Outland, Elliot H., Hughey, Jacob J.
Publicado 2023

Simphony: simulating large-scale, rhythmic data

por Singer, Jordan M., Fu, Darwin Y., Hughey, Jacob J.
Publicado 2019

Single-cell variation leads to population invariance in NF-κB signaling dynamics

por Hughey, Jacob J., Gutschow, Miriam V., Bajar, Bryce T., Covert, Markus W.
Publicado 2015

A Computational Approach to Identify Interfering Medications on Urine Drug Screening Assays without Data from Confirmatory Testing

por Ayala-Lopez, Nadia, Aref, Layla, Colby, Jennifer M, Hughey, Jacob J
Publicado 2020

The Role of Electronic Health Records in Advancing Genomic Medicine

por Linder, Jodell E., Bastarache, Lisa, Hughey, Jacob J., Peterson, Josh F.
Publicado 2021

Tau-independent Phase Analysis: A Novel Method for Accurately Determining Phase Shifts

por Tackenberg, Michael C., Jones, Jeff R., Page, Terry L., Hughey, Jacob J.
Publicado 2018

Automated quality control and cell identification of droplet-based single-cell data using dropkick

por Heiser, Cody N., Wang, Victoria M., Chen, Bob, Hughey, Jacob J., Lau, Ken S.
Publicado 2021

Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

por Hughey, Jacob J., Rhoades, Seth D., Fu, Darwin Y., Bastarache, Lisa, Denny, Joshua C., Chen, Qingxia
Publicado 2019