Evolutionary mechanisms that determine which bacterial genes are carried on plasmids

por Lehtinen, Sonja, Huisman, Jana S., Bonhoeffer, Sebastian
Publicado 2021

Twentieth-century emergence of antimicrobial resistant human- and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State

por Carroll, Laura M., Huisman, Jana S., Wiedmann, Martin
Publicado 2020

Multidrug Resistance Dynamics in Salmonella in Food Animals in the United States: An Analysis of Genomes from Public Databases

por Pires, João, Huisman, Jana S., Bonhoeffer, Sebastian, Van Boeckel, Thomas P.
Publicado 2021

Plasmid co-infection: linking biological mechanisms to ecological and evolutionary dynamics

por Igler, Claudia, Huisman, Jana S., Siedentop, Berit, Bonhoeffer, Sebastian, Lehtinen, Sonja
Publicado 2022

The origin and early spread of SARS-CoV-2 in Europe

por Nadeau, Sarah A., Vaughan, Timothy G., Scire, Jérémie, Huisman, Jana S., Stadler, Tanja
Publicado 2021

The effect of sequencing and assembly on the inference of horizontal gene transfer on chromosomal and plasmid phylogenies

por Huisman, Jana S., Vaughan, Timothy G., Egli, Adrian, Tschudin-Sutter, Sarah, Stadler, Tanja, Bonhoeffer, Sebastian
Publicado 2022

Impact of horizontal gene transfer on emergence and stability of cooperative virulence in Salmonella Typhimurium

por Bakkeren, Erik, Gül, Ersin, Huisman, Jana S., Steiger, Yves, Rocker, Andrea, Hardt, Wolf-Dietrich, Diard, Médéric
Publicado 2022

Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2

por Huisman, Jana S, Scire, Jérémie, Angst, Daniel C, Li, Jinzhou, Neher, Richard A, Maathuis, Marloes H, Bonhoeffer, Sebastian, Stadler, Tanja
Publicado 2022

estimateR: an R package to estimate and monitor the effective reproductive number

por Scire, Jérémie, Huisman, Jana S., Grosu, Ana, Angst, Daniel C., Lison, Adrian, Li, Jinzhou, Maathuis, Marloes H., Bonhoeffer, Sebastian, Stadler, Tanja
Publicado 2023

Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo

por Benz, Fabienne, Huisman, Jana S., Bakkeren, Erik, Herter, Joana A., Stadler, Tanja, Ackermann, Martin, Diard, Médéric, Egli, Adrian, Hall, Alex R., Hardt, Wolf-Dietrich, Bonhoeffer, Sebastian
Publicado 2020

Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut

por Bakkeren, Erik, Huisman, Jana S., Fattinger, Stefan A., Hausmann, Annika, Furter, Markus, Egli, Adrian, Slack, Emma, Sellin, Mikael E., Bonhoeffer, Sebastian, Regoes, Roland R., Diard, Médéric, Hardt, Wolf-Dietrich
Publicado 2019

Transmission of ESBL-producing Enterobacteriaceae and their mobile genetic elements—identification of sources by whole genome sequencing: study protocol for an observational study...

por Stadler, Tanja, Meinel, Dominik, Aguilar-Bultet, Lisandra, Huisman, Jana S, Schindler, Ruth, Egli, Adrian, Seth-Smith, Helena M B, Eichenberger, Lucas, Brodmann, Peter, Hübner, Philipp, Bagutti, Claudia, Tschudin-Sutter, Sarah
Publicado 2018

Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut

por Bakkeren, Erik, Herter, Joana Anuschka, Huisman, Jana Sanne, Steiger, Yves, Gül, Ersin, Newson, Joshua Patrick Mark, Brachmann, Alexander Oliver, Piel, Jörn, Regoes, Roland, Bonhoeffer, Sebastian, Diard, Médéric, Hardt, Wolf-Dietrich
Publicado 2021

Wastewater-Based Estimation of the Effective Reproductive Number of SARS-CoV-2

por Huisman, Jana S., Scire, Jérémie, Caduff, Lea, Fernandez-Cassi, Xavier, Ganesanandamoorthy, Pravin, Kull, Anina, Scheidegger, Andreas, Stachler, Elyse, Boehm, Alexandria B., Hughes, Bridgette, Knudson, Alisha, Topol, Aaron, Wigginton, Krista R., Wolfe, Marlene K., Kohn, Tamar, Ort, Christoph, Stadler, Tanja, Julian, Timothy R.
Publicado 2022

Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications

por Pasin, Chloé, Consiglio, Camila R., Huisman, Jana S., de Lange, Ann-Marie G., Peckham, Hannah, Vallejo-Yagüe, Enriqueta, Abela, Irene A., Islander, Ulrika, Neuner-Jehle, Nadia, Pujantell, Maria, Roth, Olivia, Schirmer, Melanie, Tepekule, Burcu, Zeeb, Marius, Hachfeld, Anna, Aebi-Popp, Karoline, Kouyos, Roger D., Bonhoeffer, Sebastian
Publicado 2023

Practical considerations for measuring the effective reproductive number, R(t)

por Gostic, Katelyn M., McGough, Lauren, Baskerville, Edward B., Abbott, Sam, Joshi, Keya, Tedijanto, Christine, Kahn, Rebecca, Niehus, Rene, Hay, James, De Salazar, Pablo M., Hellewell, Joel, Meakin, Sophie, Munday, James, Bosse, Nikos I., Sherrat, Katharine, Thompson, Robin N., White, Laura F., Huisman, Jana S., Scire, Jérémie, Bonhoeffer, Sebastian, Stadler, Tanja, Wallinga, Jacco, Funk, Sebastian, Lipsitch, Marc, Cobey, Sarah
Publicado 2020

Practical considerations for measuring the effective reproductive number, R(t)

por Gostic, Katelyn M., McGough, Lauren, Baskerville, Edward B., Abbott, Sam, Joshi, Keya, Tedijanto, Christine, Kahn, Rebecca, Niehus, Rene, Hay, James A., De Salazar, Pablo M., Hellewell, Joel, Meakin, Sophie, Munday, James D., Bosse, Nikos I., Sherrat, Katharine, Thompson, Robin N., White, Laura F., Huisman, Jana S., Scire, Jérémie, Bonhoeffer, Sebastian, Stadler, Tanja, Wallinga, Jacco, Funk, Sebastian, Lipsitch, Marc, Cobey, Sarah
Publicado 2020

Correction: Practical considerations for measuring the effective reproductive number, R(t)

por Gostic, Katelyn M., McGough, Lauren, Baskerville, Edward B., Abbott, Sam, Joshi, Keya, Tedijanto, Christine, Kahn, Rebecca, Niehus, Rene, Hay, James A., De Salazar, Pablo M., Hellewell, Joel, Meakin, Sophie, Munday, James D., Bosse, Nikos I., Sherrat, Katharine, Thompson, Robin N., White, Laura F., Huisman, Jana S., Scire, Jérémie, Bonhoeffer, Sebastian, Stadler, Tanja, Wallinga, Jacco, Funk, Sebastian, Lipsitch, Marc, Cobey, Sarah
Publicado 2021

Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland

por Chen, Chaoran, Nadeau, Sarah Ann, Topolsky, Ivan, Manceau, Marc, Huisman, Jana S., Jablonski, Kim Philipp, Fuhrmann, Lara, Dreifuss, David, Jahn, Katharina, Beckmann, Christiane, Redondo, Maurice, Noppen, Christoph, Risch, Lorenz, Risch, Martin, Wohlwend, Nadia, Kas, Sinem, Bodmer, Thomas, Roloff, Tim, Stange, Madlen, Egli, Adrian, Eckerle, Isabella, Kaiser, Laurent, Denes, Rebecca, Feldkamp, Mirjam, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Aquino, Catharine, de Gouvea, Andreia Cabral, Moccia, Maria Domenica, Grüter, Simon, Sykes, Timothy, Opitz, Lennart, White, Griffin, Neff, Laura, Popovic, Doris, Patrignani, Andrea, Tracy, Jay, Schlapbach, Ralph, Dermitzakis, Emmanouil T., Harshman, Keith, Xenarios, Ioannis, Pegeot, Henri, Cerutti, Lorenzo, Penet, Deborah, Blin, Anthony, Elies, Melyssa, Althaus, Christian L., Beisel, Christian, Beerenwinkel, Niko, Ackermann, Martin, Stadler, Tanja
Publicado 2021