Use of Genome Sequence Information for Meat Quality Trait QTL Mining for Causal Genes and Mutations on Pig Chromosome 17

por Hu, Zhi-Liang, Ramos, Antonio M., Humphray, Sean J., Rogers, Jane, Reecy, James M., Rothschild, Max F.
Publicado 2011

Swine Genome Sequencing Consortium (SGSC): A Strategic Roadmap for Sequencing The Pig Genome

por Schook, Lawrence B., Beever, Jonathan E., Rogers, Jane, Humphray, Sean, Archibald, Alan, Chardon, Patrick, Milan, Denis, Rohrer, Gary, Eversole, Kellye
Publicado 2005

Lessons learned from the initial sequencing of the pig genome: comparative analysis of an 8 Mb region of pig chromosome 17

por Hart, Elizabeth A, Caccamo, Mario, Harrow, Jennifer L, Humphray, Sean J, Gilbert, James GR, Trevanion, Steve, Hubbard, Tim, Rogers, Jane, Rothschild, Max F
Publicado 2007

A Novel CpG Island Set Identifies Tissue-Specific Methylation at Developmental Gene Loci

por Illingworth, Robert, Kerr, Alastair, DeSousa, Dina, Jørgensen, Helle, Ellis, Peter, Stalker, Jim, Jackson, David, Clee, Chris, Plumb, Robert, Rogers, Jane, Humphray, Sean, Cox, Tony, Langford, Cordelia, Bird, Adrian
Publicado 2008

Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution

por Carbone, Lucia, Harris, R. Alan, Vessere, Gery M., Mootnick, Alan R., Humphray, Sean, Rogers, Jane, Kim, Sung K., Wall, Jeffrey D., Martin, David, Jurka, Jerzy, Milosavljevic, Aleksandar, de Jong, Pieter J.
Publicado 2009

Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma

por Raiber, Eun-Ang, Beraldi, Dario, Martínez Cuesta, Sergio, McInroy, Gordon R., Kingsbury, Zoya, Becq, Jennifer, James, Terena, Lopes, Margarida, Allinson, Kieren, Field, Sarah, Humphray, Sean, Santarius, Thomas, Watts, Colin, Bentley, David, Balasubramanian, Shankar
Publicado 2017

A High-Resolution Map of Synteny Disruptions in Gibbon and Human Genomes

por Carbone, Lucia, Vessere, Gery M, Hallers, Boudewijn F.H. ten, Zhu, Baoli, Osoegawa, Kazutoyo, Mootnick, Alan, Kofler, Andrea, Wienberg, Johannes, Rogers, Jane, Humphray, Sean, Scott, Carol, Harris, R. Alan, Milosavljevic, Aleksandar, de Jong, Pieter J
Publicado 2006

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

por Eberle, Michael A., Fritzilas, Epameinondas, Krusche, Peter, Källberg, Morten, Moore, Benjamin L., Bekritsky, Mitchell A., Iqbal, Zamin, Chuang, Han-Yu, Humphray, Sean J., Halpern, Aaron L., Kruglyak, Semyon, Margulies, Elliott H., McVean, Gil, Bentley, David R.
Publicado 2017

A Conserved Supergene Locus Controls Colour Pattern Diversity in Heliconius Butterflies

por Joron, Mathieu, Papa, Riccardo, Beltrán, Margarita, Chamberlain, Nicola, Mavárez, Jesús, Baxter, Simon, Abanto, Moisés, Bermingham, Eldredge, Humphray, Sean J, Rogers, Jane, Beasley, Helen, Barlow, Karen, H. ffrench-Constant, Richard, Mallet, James, McMillan, W. Owen, Jiggins, Chris D
Publicado 2006

Definition of the zebrafish genome using flow cytometry and cytogenetic mapping

por Freeman, Jennifer L, Adeniyi, Adeola, Banerjee, Ruby, Dallaire, Stephanie, Maguire, Sean F, Chi, Jianxiang, Ng, Bee Ling, Zepeda, Cinthya, Scott, Carol E, Humphray, Sean, Rogers, Jane, Zhou, Yi, Zon, Leonard I, Carter, Nigel P, Yang, Fengtang, Lee, Charles
Publicado 2007

Whole-genome sequencing provides new insights into the clonal architecture of Barrett’s esophagus and esophageal adenocarcinoma

por Ross-Innes, Caryn S., Becq, Jennifer, Warren, Andrew, Cheetham, R. Keira, Northen, Helen, O’Donovan, Maria, Malhotra, Shalini, di Pietro, Massimiliano, Ivakhno, Sergii, He, Miao, Weaver, Jamie M.J., Lynch, Andy G., Kingsbury, Zoya, Ross, Mark, Humphray, Sean, Bentley, David, Fitzgerald, Rebecca C.
Publicado 2015

Intraclonal heterogeneity is a critical early event in the development of myeloma and precedes the development of clinical symptoms

por Walker, Brian A, Wardell, Christopher P, Melchor, Lorenzo, Brioli, Annamaria, Johnson, David C, Kaiser, Martin F, Mirabella, Fabio, Lopez-Corral, Lucia, Humphray, Sean, Murray, Lisa, Ross, Mark, Bentley, David, Gutiérrez, Norma C., Garcia-Sanz, Ramón, San Miguel, Jesus, Davies, Faith E, Gonzalez, David, Morgan, Gareth J
Publicado 2013

Genome-wide end-sequenced BAC resources for the NOD/MrkTac(☆) and NOD/ShiLtJ(☆☆) mouse genomes

por Steward, Charles A., Humphray, Sean, Plumb, Bob, Jones, Matthew C., Quail, Michael A., Rice, Stephen, Cox, Tony, Davies, Rob, Bonfield, James, Keane, Thomas M., Nefedov, Michael, de Jong, Pieter J., Lyons, Paul, Wicker, Linda, Todd, John, Hayashizaki, Yoshihide, Gulban, Omid, Danska, Jayne, Harrow, Jen, Hubbard, Tim, Rogers, Jane, Adams, David J.
Publicado 2010

A high utility integrated map of the pig genome

por Humphray, Sean J, Scott, Carol E, Clark, Richard, Marron, Brandy, Bender, Clare, Camm, Nick, Davis, Jayne, Jenks, Andrew, Noon, Angela, Patel, Manish, Sehra, Harminder, Yang, Fengtang, Rogatcheva, Margarita B, Milan, Denis, Chardon, Patrick, Rohrer, Gary, Nonneman, Dan, de Jong, Pieter, Meyers, Stacey N, Archibald, Alan, Beever, Jonathan E, Schook, Lawrence B, Rogers, Jane
Publicado 2007

Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer

por Murtaza, Muhammed, Dawson, Sarah-Jane, Pogrebniak, Katherine, Rueda, Oscar M., Provenzano, Elena, Grant, John, Chin, Suet-Feung, Tsui, Dana W. Y., Marass, Francesco, Gale, Davina, Ali, H. Raza, Shah, Pankti, Contente-Cuomo, Tania, Farahani, Hossein, Shumansky, Karey, Kingsbury, Zoya, Humphray, Sean, Bentley, David, Shah, Sohrab P., Wallis, Matthew, Rosenfeld, Nitzan, Caldas, Carlos
Publicado 2015

X-linked hypomyelination with spondylometaphyseal dysplasia (H-SMD) associated with mutations in AIFM1

por Miyake, Noriko, Wolf, Nicole I., Cayami, Ferdy K., Crawford, Joanna, Bley, Annette, Bulas, Dorothy, Conant, Alex, Bent, Stephen J., Gripp, Karen W., Hahn, Andreas, Humphray, Sean, Kimura-Ohba, Shihoko, Kingsbury, Zoya, Lajoie, Bryan R., Lal, Dennis, Micha, Dimitra, Pizzino, Amy, Sinke, Richard J., Sival, Deborah, Stolte-Dijkstra, Irene, Superti-Furga, Andrea, Ulrick, Nicole, Taft, Ryan J., Ogata, Tsutomu, Ozono, Keiichi, Matsumoto, Naomichi, Neubauer, Bernd A., Simons, Cas, Vanderver, Adeline
Publicado 2017

TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer

por Chien, Jeremy, Sicotte, Hugues, Fan, Jian-Bing, Humphray, Sean, Cunningham, Julie M., Kalli, Kimberly R., Oberg, Ann L., Hart, Steven N., Li, Ying, Davila, Jaime I., Baheti, Saurabh, Wang, Chen, Dietmann, Sabine, Atkinson, Elizabeth J., Asmann, Yan W., Bell, Debra A., Ota, Takayo, Tarabishy, Yaman, Kuang, Rui, Bibikova, Marina, Cheetham, R. Keira, Grocock, Russell J., Swisher, Elizabeth M., Peden, John, Bentley, David, Kocher, Jean-Pierre A., Kaufmann, Scott H., Hartmann, Lynn C., Shridhar, Viji, Goode, Ellen L.
Publicado 2015

Germline mutations in the proof-reading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas

por Palles, Claire, Cazier, Jean-Baptiste, Howarth, Kimberley M, Domingo, Enric, Jones, Angela M., Broderick, Peter, Kemp, Zoe, Spain, Sarah L, Almeida, Estrella Guarino, Salguero, Israel, Sherborne, Amy, Chubb, Daniel, Carvajal-Carmona, Luis G, Ma, Yusanne, Kaur, Kulvinder, Dobbins, Sara, Barclay, Ella, Gorman, Maggie, Martin, Lynn, Kovac, Michal B, Humphray, Sean, Lucassen, Anneke, Holmes, Christopher, Bentley, David, Donnelly, Peter, Taylor, Jenny, Petridis, Christos, Roylance, Rebecca, Sawyer, Elinor J, Kerr, David J., Clark, Susan, Grimes, Jonathan, Kearsey, Stephen E, Thomas, Huw JW, McVean, Gilean, Houlston, Richard S, Tomlinson, Ian
Publicado 2012

Detection of long repeat expansions from PCR-free whole-genome sequence data

por Dolzhenko, Egor, van Vugt, Joke J.F.A., Shaw, Richard J., Bekritsky, Mitchell A., van Blitterswijk, Marka, Narzisi, Giuseppe, Ajay, Subramanian S., Rajan, Vani, Lajoie, Bryan R., Johnson, Nathan H., Kingsbury, Zoya, Humphray, Sean J., Schellevis, Raymond D., Brands, William J., Baker, Matt, Rademakers, Rosa, Kooyman, Maarten, Tazelaar, Gijs H.P., van Es, Michael A., McLaughlin, Russell, Sproviero, William, Shatunov, Aleksey, Jones, Ashley, Al Khleifat, Ahmad, Pittman, Alan, Morgan, Sarah, Hardiman, Orla, Al-Chalabi, Ammar, Shaw, Chris, Smith, Bradley, Neo, Edmund J., Morrison, Karen, Shaw, Pamela J., Reeves, Catherine, Winterkorn, Lara, Wexler, Nancy S., Housman, David E., Ng, Christopher W., Li, Alina L., Taft, Ryan J., van den Berg, Leonard H., Bentley, David R., Veldink, Jan H., Eberle, Michael A.
Publicado 2017

Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer

por Murchison, Elizabeth P., Schulz-Trieglaff, Ole B., Ning, Zemin, Alexandrov, Ludmil B., Bauer, Markus J., Fu, Beiyuan, Hims, Matthew, Ding, Zhihao, Ivakhno, Sergii, Stewart, Caitlin, Ng, Bee Ling, Wong, Wendy, Aken, Bronwen, White, Simon, Alsop, Amber, Becq, Jennifer, Bignell, Graham R., Cheetham, R. Keira, Cheng, William, Connor, Thomas R., Cox, Anthony J., Feng, Zhi-Ping, Gu, Yong, Grocock, Russell J., Harris, Simon R., Khrebtukova, Irina, Kingsbury, Zoya, Kowarsky, Mark, Kreiss, Alexandre, Luo, Shujun, Marshall, John, McBride, David J., Murray, Lisa, Pearse, Anne-Maree, Raine, Keiran, Rasolonjatovo, Isabelle, Shaw, Richard, Tedder, Philip, Tregidgo, Carolyn, Vilella, Albert J., Wedge, David C., Woods, Gregory M., Gormley, Niall, Humphray, Sean, Schroth, Gary, Smith, Geoffrey, Hall, Kevin, Searle, Stephen M.J., Carter, Nigel P., Papenfuss, Anthony T., Futreal, P. Andrew, Campbell, Peter J., Yang, Fengtang, Bentley, David R., Evers, Dirk J., Stratton, Michael R.
Publicado 2012