pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens

por Hundal, Jasreet, Carreno, Beatriz M., Petti, Allegra A., Linette, Gerald P., Griffith, Obi L., Mardis, Elaine R., Griffith, Malachi
Publicado 2016

Cancer Immunogenomics: Computational Neoantigen Identification and Vaccine Design

por Hundal, Jasreet, Miller, Christopher A., Griffith, Malachi, Griffith, Obi L., Walker, Jason, Kiwala, Susanna, Graubert, Aaron, McMichael, Joshua, Coffman, Adam, Mardis, Elaine R.
Publicado 2017

Accounting for proximal variants improves neoantigen prediction

por Hundal, Jasreet, Kiwala, Susanna, Feng, Yang-Yang, Liu, Connor J., Govindan, Ramaswamy, Chapman, William C., Uppaluri, Ravindra, Swamidass, S Joshua, Griffith, Obi L., Mardis, Elaine R., Griffith, Malachi
Publicado 2018

U2AF1 Mutations Alter Sequence Specificity of pre-mRNA Binding and Splicing

por Okeyo-Owuor, Theresa, White, Brian S., Chatrikhi, Rakesh, Mohan, Dipika R., Kim, Sanghyun, Griffith, Malachi, Ding, Li, Ketkar-Kulkarni, Shamika, Hundal, Jasreet, Laird, Kholiswa M., Kielkopf, Clara L., Ley, Timothy J., Walter, Matthew J., Graubert, Timothy A.
Publicado 2014

Cancer Exome Analysis Reveals a T Cell Dependent Mechanism of Cancer Immunoediting

por Matsushita, Hirokazu, Vesely, Matthew D., Koboldt, Daniel C., Rickert, Charles G., Uppaluri, Ravindra, Magrini, Vincent J., Arthur, Cora D., White, J. Michael, Chen, Yee-Shiuan, Shea, Lauren K., Hundal, Jasreet, Wendl, Michael C., Demeter, Ryan, Wylie, Todd, Allison, James P., Smyth, Mark J., Old, Lloyd J., Mardis, Elaine R., Schreiber, Robert D.
Publicado 2012

The Role of TP53 Mutations in the Origin and Evolution of Therapy-Related AML

por Wong, Terrence N., Ramsingh, Giridharan, Young, Andrew L., Miller, Christopher A., Touma, Waseem, Welch, John S., Lamprecht, Tamara L., Shen, Dong, Hundal, Jasreet, Fulton, Robert S., Heath, Sharon, Baty, Jack D., Klco, Jeffery M., Ding, Li, Mardis, Elaine R., Westervelt, Peter, DiPersio, John F., Walter, Matthew J., Graubert, Timothy A., Ley, Timothy J., Druley, Todd, Link, Daniel C., Wilson, Richard K.
Publicado 2014

Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples

por Barnell, Erica K., Ronning, Peter, Campbell, Katie M., Krysiak, Kilannin, Ainscough, Benjamin J., Sheta, Lana M., Pema, Shahil P., Schmidt, Alina D., Richters, Megan, Cotto, Kelsy C., Danos, Arpad M., Ramirez, Cody, Skidmore, Zachary L., Spies, Nicholas C., Hundal, Jasreet, Sediqzad, Malik S., Kunisaki, Jason, Gomez, Felicia, Trani, Lee, Matlock, Matthew, Wagner, Alex H., Swamidass, S. Joshua, Griffith, Malachi, Griffith, Obi L.
Publicado 2018

Checkpoint Blockade Cancer Immunotherapy Targets Tumour-Specific Mutant Antigens

por Gubin, Matthew M., Zhang, Xiuli, Schuster, Heiko, Caron, Etienne, Ward, Jeffrey P., Noguchi, Takuro, Ivanova, Yulia, Hundal, Jasreet, Arthur, Cora D., Krebber, Willem-Jan, Mulder, Gwenn E., Toebes, Mireille, Vesely, Matthew D., Lam, Samuel S.K., Korman, Alan J., Allison, James P., Freeman, Gordon J., Sharpe, Arlene H., Pearce, Erika L., Schumacher, Ton N., Aebersold, Ruedi, Rammensee, Hans-Georg, Melief, Cornelis J. M., Mardis, Elaine R., Gillanders, William E., Artyomov, Maxim N., Schreiber, Robert D.
Publicado 2014

Complete Remission of Widely Metastatic Human Epidermal Growth Factor Receptor 2–Amplified Pancreatic Adenocarcinoma After Precision Immune and Targeted Therapy With Description of...

por King, Daniel A., Smith, Amber R., Pineda, Gino, Nakano, Michitaka, Michelini, Flavia, Goedegebuure, S. Peter, Thyparambil, Sheeno, Liao, Wei-Li, McCormick, Aaron, Ju, Jihang, Cioffi, Michele, Zhang, Xiuli, Hundal, Jasreet, Griffith, Malachi, Grandori, Carla, Pollastro, Maddy, Rosati, Rachele, Margossian, Astrid, Chatterjee, Payel, Ainge, Trevor, Flory, Marta, Ocampo, Paolo, Chen, Lee-may, Poultsides, George A., Baron, Ari D., Chang, Daniel T., Herman, Joseph M., Gillanders, William E., Park, Haeseong, Hoos, William A., Nichols, Mike, Fisher, George A., Kuo, Calvin J.
Publicado 2023

The prognostic effects of somatic mutations in ER-positive breast cancer

por Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.
Publicado 2018

Author Correction: The prognostic effects of somatic mutations in ER-positive breast cancer

por Griffith, Obi L., Spies, Nicholas C., Anurag, Meenakshi, Griffith, Malachi, Luo, Jingqin, Tu, Dongsheng, Yeo, Belinda, Kunisaki, Jason, Miller, Christopher A, Krysiak, Kilannin, Hundal, Jasreet, Ainscough, Benjamin J, Skidmore, Zachary L., Campbell, Katie, Kumar, Runjun, Fronick, Catrina, Cook, Lisa, Snider, Jacqueline E., Davies, Sherri, Kavuri, Shyam M., Chang, Eric C., Magrini, Vincent, Larson, David E., Fulton, Robert S, Liu, Shuzhen, Leung, Samuel, Voduc, David, Bose, Ron, Dowsett, Mitch, Wilson, Richard K., Nielsen, Torsten O., Mardis, Elaine R, Ellis, Matthew J.
Publicado 2018

Genome Modeling System: A Knowledge Management Platform for Genomics

por Griffith, Malachi, Griffith, Obi L., Smith, Scott M., Ramu, Avinash, Callaway, Matthew B., Brummett, Anthony M., Kiwala, Michael J., Coffman, Adam C., Regier, Allison A., Oberkfell, Ben J., Sanderson, Gabriel E., Mooney, Thomas P., Nutter, Nathaniel G., Belter, Edward A., Du, Feiyu, Long, Robert L., Abbott, Travis E., Ferguson, Ian T., Morton, David L., Burnett, Mark M., Weible, James V., Peck, Joshua B., Dukes, Adam, McMichael, Joshua F., Lolofie, Justin T., Derickson, Brian R., Hundal, Jasreet, Skidmore, Zachary L., Ainscough, Benjamin J., Dees, Nathan D., Schierding, William S., Kandoth, Cyriac, Kim, Kyung H., Lu, Charles, Harris, Christopher C., Maher, Nicole, Maher, Christopher A., Magrini, Vincent J., Abbott, Benjamin S., Chen, Ken, Clark, Eric, Das, Indraniel, Fan, Xian, Hawkins, Amy E., Hepler, Todd G., Wylie, Todd N., Leonard, Shawn M., Schroeder, William E., Shi, Xiaoqi, Carmichael, Lynn K., Weil, Matthew R., Wohlstadter, Richard W., Stiehr, Gary, McLellan, Michael D., Pohl, Craig S., Miller, Christopher A., Koboldt, Daniel C., Walker, Jason R., Eldred, James M., Larson, David E., Dooling, David J., Ding, Li, Mardis, Elaine R., Wilson, Richard K.
Publicado 2015