The Intricacy of the Viral-Human Protein Interaction Networks: Resources, Data, and Analyses

por Saha, Deeya, Iannuccelli, Marta, Brun, Christine, Zanzoni, Andreas, Licata, Luana
Publicado 2022

A Resource to Infer Molecular Paths Linking Cancer Mutations to Perturbation of Cell Metabolism

por Iannuccelli, Marta, Lo Surdo, Prisca, Licata, Luana, Castagnoli, Luisa, Cesareni, Gianni, Perfetto, Livia
Publicado 2022

SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update

por Lo Surdo, Prisca, Iannuccelli, Marta, Contino, Silvia, Castagnoli, Luisa, Licata, Luana, Cesareni, Gianni, Perfetto, Livia
Publicado 2022

DISNOR: a disease network open resource

por Lo Surdo, Prisca, Calderone, Alberto, Iannuccelli, Marta, Licata, Luana, Peluso, Daniele, Castagnoli, Luisa, Cesareni, Gianni, Perfetto, Livia
Publicado 2018

Integrating Patient-Specific Information into Logic Models of Complex Diseases: Application to Acute Myeloid Leukemia

por Palma, Alessandro, Iannuccelli, Marta, Rozzo, Ilaria, Licata, Luana, Perfetto, Livia, Massacci, Giorgia, Castagnoli, Luisa, Cesareni, Gianni, Sacco, Francesca
Publicado 2021

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

por Chatr-aryamontri, Andrew, Winter, Andrew, Perfetto, Livia, Briganti, Leonardo, Licata, Luana, Iannuccelli, Marta, Castagnoli, Luisa, Cesareni, Gianni, Tyers, Mike
Publicado 2011

CancerGeneNet: linking driver genes to cancer hallmarks

por Iannuccelli, Marta, Micarelli, Elisa, Surdo, Prisca Lo, Palma, Alessandro, Perfetto, Livia, Rozzo, Ilaria, Castagnoli, Luisa, Licata, Luana, Cesareni, Gianni
Publicado 2020

SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update

por Licata, Luana, Lo Surdo, Prisca, Iannuccelli, Marta, Palma, Alessandro, Micarelli, Elisa, Perfetto, Livia, Peluso, Daniele, Calderone, Alberto, Castagnoli, Luisa, Cesareni, Gianni
Publicado 2020

MINT, the molecular interaction database: 2012 update

por Licata, Luana, Briganti, Leonardo, Peluso, Daniele, Perfetto, Livia, Iannuccelli, Marta, Galeota, Eugenia, Sacco, Francesca, Palma, Anita, Nardozza, Aurelio Pio, Santonico, Elena, Castagnoli, Luisa, Cesareni, Gianni
Publicado 2012

A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection

por Perfetto, Livia, Micarelli, Elisa, Iannuccelli, Marta, Lo Surdo, Prisca, Giuliani, Giulio, Latini, Sara, Pugliese, Giusj Monia, Massacci, Giorgia, Vumbaca, Simone, Riccio, Federica, Fuoco, Claudia, Paoluzi, Serena, Castagnoli, Luisa, Cesareni, Gianni, Licata, Luana, Sacco, Francesca
Publicado 2021

SIGNOR: a database of causal relationships between biological entities

por Perfetto, Livia, Briganti, Leonardo, Calderone, Alberto, Perpetuini, Andrea Cerquone, Iannuccelli, Marta, Langone, Francesca, Licata, Luana, Marinkovic, Milica, Mattioni, Anna, Pavlidou, Theodora, Peluso, Daniele, Petrilli, Lucia Lisa, Pirrò, Stefano, Posca, Daniela, Santonico, Elena, Silvestri, Alessandra, Spada, Filomena, Castagnoli, Luisa, Cesareni, Gianni
Publicado 2016

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration

por Palma, Alessandro, Cerquone Perpetuini, Andrea, Ferrentino, Federica, Fuoco, Claudia, Gargioli, Cesare, Giuliani, Giulio, Iannuccelli, Marta, Licata, Luana, Micarelli, Elisa, Paoluzi, Serena, Perfetto, Livia, Petrilli, Lucia Lisa, Reggio, Alessio, Rosina, Marco, Sacco, Francesca, Vumbaca, Simone, Zuccotti, Alessandro, Castagnoli, Luisa, Cesareni, Gianni
Publicado 2019

Towards a unified open access dataset of molecular interactions

por Porras, Pablo, Barrera, Elisabet, Bridge, Alan, del-Toro, Noemi, Cesareni, Gianni, Duesbury, Margaret, Hermjakob, Henning, Iannuccelli, Marta, Jurisica, Igor, Kotlyar, Max, Licata, Luana, Lovering, Ruth C., Lynn, David J., Meldal, Birgit, Nanduri, Bindu, Paneerselvam, Kalpana, Panni, Simona, Pastrello, Chiara, Pellegrini, Matteo, Perfetto, Livia, Rahimzadeh, Negin, Ratan, Prashansa, Ricard-Blum, Sylvie, Salwinski, Lukasz, Shirodkar, Gautam, Shrivastava, Anjalia, Orchard, Sandra
Publicado 2020

The IntAct database: efficient access to fine-grained molecular interaction data

por del Toro, Noemi, Shrivastava, Anjali, Ragueneau, Eliot, Meldal, Birgit, Combe, Colin, Barrera, Elisabet, Perfetto, Livia, How, Karyn, Ratan, Prashansa, Shirodkar, Gautam, Lu, Odilia, Mészáros, Bálint, Watkins, Xavier, Pundir, Sangya, Licata, Luana, Iannuccelli, Marta, Pellegrini, Matteo, Martin, Maria Jesus, Panni, Simona, Duesbury, Margaret, Vallet, Sylvain D, Rappsilber, Juri, Ricard-Blum, Sylvie, Cesareni, Gianni, Salwinski, Lukasz, Orchard, Sandra, Porras, Pablo, Panneerselvam, Kalpana, Hermjakob, Henning
Publicado 2021

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

por Krallinger, Martin, Vazquez, Miguel, Leitner, Florian, Salgado, David, Chatr-aryamontri, Andrew, Winter, Andrew, Perfetto, Livia, Briganti, Leonardo, Licata, Luana, Iannuccelli, Marta, Castagnoli, Luisa, Cesareni, Gianni, Tyers, Mike, Schneider, Gerold, Rinaldi, Fabio, Leaman, Robert, Gonzalez, Graciela, Matos, Sergio, Kim, Sun, Wilbur, W John, Rocha, Luis, Shatkay, Hagit, Tendulkar, Ashish V, Agarwal, Shashank, Liu, Feifan, Wang, Xinglong, Rak, Rafal, Noto, Keith, Elkan, Charles, Lu, Zhiyong, Dogan, Rezarta Islamaj, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A, Valencia, Alfonso
Publicado 2011

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

por Orchard, Sandra, Ammari, Mais, Aranda, Bruno, Breuza, Lionel, Briganti, Leonardo, Broackes-Carter, Fiona, Campbell, Nancy H., Chavali, Gayatri, Chen, Carol, del-Toro, Noemi, Duesbury, Margaret, Dumousseau, Marine, Galeota, Eugenia, Hinz, Ursula, Iannuccelli, Marta, Jagannathan, Sruthi, Jimenez, Rafael, Khadake, Jyoti, Lagreid, Astrid, Licata, Luana, Lovering, Ruth C., Meldal, Birgit, Melidoni, Anna N., Milagros, Mila, Peluso, Daniele, Perfetto, Livia, Porras, Pablo, Raghunath, Arathi, Ricard-Blum, Sylvie, Roechert, Bernd, Stutz, Andre, Tognolli, Michael, van Roey, Kim, Cesareni, Gianni, Hermjakob, Henning
Publicado 2014

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, Devasahayam Arokia Balaya, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, D A B, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021