Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus

por Illingworth, Christopher J.R.
Publicado 2015

Distinguishing Driver and Passenger Mutations in an Evolutionary History Categorized by Interference

por Illingworth, Christopher J. R., Mustonen, Ville
Publicado 2011

A method to infer positive selection from marker dynamics in an asexual population

por Illingworth, Christopher J. R., Mustonen, Ville
Publicado 2012

Components of Selection in the Evolution of the Influenza Virus: Linkage Effects Beat Inherent Selection

por Illingworth, Christopher J. R., Mustonen, Ville
Publicado 2012

Measurements of intrahost viral diversity require an unbiased diversity metric

por Zhao, Lei, Illingworth, Christopher J R
Publicado 2019

Identifying Selection in the Within-Host Evolution of Influenza Using Viral Sequence Data

por Illingworth, Christopher J. R., Fischer, Andrej, Mustonen, Ville
Publicado 2014

Inferring Fitness Effects from Time-Resolved Sequence Data with a Delay-Deterministic Model

por Nené, Nuno R., Dunham, Alistair S., Illingworth, Christopher J. R.
Publicado 2018

Mutational load causes stochastic evolutionary outcomes in acute RNA viral infection

por Zhao, Lei, Abbasi, Ali B, Illingworth, Christopher J R
Publicado 2019

A novel framework for inferring parameters of transmission from viral sequence data

por Lumby, Casper K., Nene, Nuno R., Illingworth, Christopher J. R.
Publicado 2018

Building a mechanistic mathematical model of hepatitis C virus entry

por Kalemera, Mphatso, Mincheva, Dilyana, Grove, Joe, Illingworth, Christopher J. R.
Publicado 2019

High-Definition Reconstruction of Clonal Composition in Cancer

por Fischer, Andrej, Vázquez-García, Ignacio, Illingworth, Christopher J.R., Mustonen, Ville
Publicado 2014

Inferring Genome-Wide Recombination Landscapes from Advanced Intercross Lines: Application to Yeast Crosses

por Illingworth, Christopher J. R., Parts, Leopold, Bergström, Anders, Liti, Gianni, Mustonen, Ville
Publicado 2013

Quantifying Selection Acting on a Complex Trait Using Allele Frequency Time Series Data

por Illingworth, Christopher J.R., Parts, Leopold, Schiffels, Stephan, Liti, Gianni, Mustonen, Ville
Publicado 2012

Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method

por Ghafari, Mahan, Lumby, Casper K., Weissman, Daniel B., Illingworth, Christopher J. R.
Publicado 2020

Addicted? Reduced host resistance in populations with defensive symbionts

por Martinez, Julien, Cogni, Rodrigo, Cao, Chuan, Smith, Sophie, Illingworth, Christopher J. R., Jiggins, Francis M.
Publicado 2016

On the effective depth of viral sequence data

por Illingworth, Christopher J R, Roy, Sunando, Beale, Mathew A, Tutill, Helena, Williams, Rachel, Breuer, Judith
Publicado 2017

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis

por Chintapalli, Sree V., Illingworth, Christopher J. R., Upton, Graham J. G., Sacquin-Mora, Sophie, Reeves, Philip J., Mohammedali, Hani S., Reynolds, Christopher A.
Publicado 2014

Transmission of B.1.617.2 Delta variant between vaccinated healthcare workers

por Kemp, Steven A., Cheng, Mark T. K., Hamilton, William L., Kamelian, Kimia, Singh, Sujit, Rakshit, Partha, Agrawal, Anurag, Illingworth, Christopher J. R., Gupta, Ravindra K.
Publicado 2022

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

por Reid, Adam J, Talman, Arthur M, Bennett, Hayley M, Gomes, Ana R, Sanders, Mandy J, Illingworth, Christopher J R, Billker, Oliver, Berriman, Matthew, Lawniczak, Mara KN
Publicado 2018

A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

por Illingworth, Christopher J. R., Raghwani, Jayna, Serwadda, David, Sewankambo, Nelson K., Robb, Merlin L., Eller, Michael A., Redd, Andrew R., Quinn, Thomas C., Lythgoe, Katrina A.
Publicado 2020