Learning cell identity in immunology, neuroscience, and cancer

por Medina, Stephanie, Ihrie, Rebecca A., Irish, Jonathan M.
Publicado 2022

Circulating Myeloid Regulatory Cells: Promising Biomarkers in B-Cell Lymphomas

por Ferrant, Juliette, Lhomme, Faustine, Le Gallou, Simon, Irish, Jonathan M., Roussel, Mikael
Publicado 2021

In Vivo Autofluorescence Imaging of Tumor Heterogeneity in Response to Treatment

por Shah, Amy T., Diggins, Kirsten E., Walsh, Alex J., Irish, Jonathan M., Skala, Melissa C.
Publicado 2015

Phospho-specific flow cytometry identifies aberrant signaling in indolent B-cell lymphoma

por Blix, Egil S, Irish, Jonathan M, Husebekk, Anne, Delabie, Jan, Forfang, Lise, Tierens, Anne M, Myklebust, June H, Kolstad, Arne
Publicado 2012

NetworkPainter: dynamic intracellular pathway animation in Cytobank

por Karr, Jonathan R, Guturu, Harendra, Chen, Edward Y, Blair, Stuart L, Irish, Jonathan M, Kotecha, Nikesh, Covert, Markus W
Publicado 2015

Discovery of human cell selective effector molecules using single cell multiplexed activity metabolomics

por Earl, David C., Ferrell, P. Brent, Leelatian, Nalin, Froese, Jordan T., Reisman, Benjamin J., Irish, Jonathan M., Bachmann, Brian O.
Publicado 2018

An immunogenic cell injury module for the single-cell multiplexed activity metabolomics platform to identify promising anti-cancer natural products

por Balsamo, Joseph A., Penton, Kathryn E., Zhao, Zhihan, Hayes, Madeline J., Lima, Sierra M., Irish, Jonathan M., Bachmann, Brian O.
Publicado 2022

High-Dimensional Analysis Reveals Distinct Endotypes in Patients With Idiopathic Inflammatory Myopathies

por Wilfong, Erin M., Bartkowiak, Todd, Vowell, Katherine N., Westlake, Camille S., Irish, Jonathan M., Kendall, Peggy L., Crofford, Leslie J., Bonami, Rachel H.
Publicado 2022

Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy

por Barone, Sierra M, Paul, Alberta GA, Muehling, Lyndsey M, Lannigan, Joanne A, Kwok, William W, Turner, Ronald B, Woodfolk, Judith A, Irish, Jonathan M
Publicado 2021

Location-dependent maintenance of intrinsic susceptibility to mTORC1-driven tumorigenesis

por Rushing, Gabrielle V, Brockman, Asa A, Bollig, Madelyn K, Leelatian, Nalin, Mobley, Bret C, Irish, Jonathan M, Ess, Kevin C, Fu, Cary, Ihrie, Rebecca A
Publicado 2019

Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy

por Barone, Sierra M., Paul, Alberta G.A., Muehling, Lyndsey M., Lannigan, Joanne A., Kwok, William W., Turner, Ronald B., Woodfolk, Judith A., Irish, Jonathan M.
Publicado 2020

Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness

por Senosain, Maria-Fernanda, Zou, Yong, Patel, Khushbu, Zhao, Shilin, Coullomb, Alexis, Rowe, Dianna J., Lehman, Jonathan M., Irish, Jonathan M., Maldonado, Fabien, Kammer, Michael N., Pancaldi, Vera, Lopez, Carlos F.
Publicado 2023

Systems Immunology Analyses of STAT1 Gain-of-Function Immune Phenotypes Reveal Heterogeneous Response to IL-6 and Broad Immunometabolic Roles for STAT1

por Kaviany, Saara, Bartkowiak, Todd, Dulek, Daniel E., Khan, Yasmin W., Hayes, Madeline J., Schaefer, Samuel G., Ye, Xiang, Dahunsi, Debolanle O., Connelly, James A., Irish, Jonathan M., Rathmell, Jeffrey C.
Publicado 2022

Dephosphorylation of 4EBP1/2 Induces Prenatal Neural Stem Cell Quiescence

por Geben, Laura C., Brockman, Asa A., Chalkley, Mary Bronwen L., Sweet, Serena R., Gallagher, Julia E., Scheuing, Alexandra L., Simerly, Richard B., Ess, Kevin C., Irish, Jonathan M., Ihrie, Rebecca A.
Publicado 2023

Machine learning reveals chronic graft-versus-host disease phenotypes and stratifies survival after stem cell transplant for hematologic malignancies

por Gandelman, Jocelyn S., Byrne, Michael T., Mistry, Akshitkumar M., Polikowsky, Hannah G., Diggins, Kirsten E., Chen, Heidi, Lee, Stephanie J., Arora, Mukta, Cutler, Corey, Flowers, Mary, Pidala, Joseph, Irish, Jonathan M., Jagasia, Madan H.
Publicado 2019

Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF-α-induced apoptosis in vivo

por Simmons, Alan J, Banerjee, Amrita, McKinley, Eliot T, Scurrah, Cherie' R, Herring, Charles A, Gewin, Leslie S, Masuzaki, Ryota, Karp, Seth J, Franklin, Jeffrey L, Gerdes, Michael J, Irish, Jonathan M, Coffey, Robert J, Lau, Ken S
Publicado 2015

Cytometry‐based single‐cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF‐α‐induced apoptosis in vivo

por Simmons, Alan J, Banerjee, Amrita, McKinley, Eliot T, Scurrah, Cherie’ R, Herring, Charles A, Gewin, Leslie S, Masuzaki, Ryota, Karp, Seth J, Franklin, Jeffrey L, Gerdes, Michael J, Irish, Jonathan M, Coffey, Robert J, Lau, Ken S
Publicado 2016

HLA-DR cancer cells expression correlates with T cell infiltration and is enriched in lung adenocarcinoma with indolent behavior

por Senosain, Maria-Fernanda, Zou, Yong, Novitskaya, Tatiana, Vasiukov, Georgii, Balar, Aneri B., Rowe, Dianna J., Doxie, Deon B., Lehman, Jonathan M., Eisenberg, Rosana, Maldonado, Fabien, Zijlstra, Andries, Novitskiy, Sergey V., Irish, Jonathan M., Massion, Pierre P.
Publicado 2021

Genomic Profiling of T-Cell Neoplasms Reveals Frequent JAK1 and JAK3 Mutations With Clonal Evasion From Targeted Therapies

por Greenplate, Allison, Wang, Kai, Tripathi, Rati M., Palma, Norma, Ali, Siraj M., Stephens, Phil J., Miller, Vincent A., Shyr, Yu, Guo, Yan, Reddy, Nishitha M., Kozhaya, Lina, Unutmaz, Derya, Chen, Xueyan, Irish, Jonathan M., Davé, Utpal P.
Publicado 2018

Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells

por Leelatian, Nalin, Sinnaeve, Justine, Mistry, Akshitkumar M, Barone, Sierra M, Brockman, Asa A, Diggins, Kirsten E, Greenplate, Allison R, Weaver, Kyle D, Thompson, Reid C, Chambless, Lola B, Mobley, Bret C, Ihrie, Rebecca A, Irish, Jonathan M
Publicado 2020