Mathematical Model for Length Control by the Timing of Substrate Switching in the Type III Secretion System

por Nariya, Maulik K., Israeli, Johnny, Shi, Jack J., Deeds, Eric J.
Publicado 2016

Accelerating Minimap2 for Accurate Long Read Alignment on GPUs

por Sadasivan, Harisankar, Maric, Milos, Dawson, Eric, Iyer, Vishanth, Israeli, Johnny, Narayanasamy, Satish
Publicado 2023

Deep learning-based enhancement of epigenomics data with AtacWorks

por Lal, Avantika, Chiang, Zachary D., Yakovenko, Nikolai, Duarte, Fabiana M., Israeli, Johnny, Buenrostro, Jason D.
Publicado 2021

Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility

por Stowers, Ryan S., Shcherbina, Anna, Israeli, Johnny, Gruber, Joshua J., Chang, Julie, Nam, Sungmin, Rabiee, Atefeh, Teruel, Mary N., Snyder, Michael P., Kundaje, Anshul, Chaudhuri, Ovijit
Publicado 2019

The Kipoi repository accelerates community exchange and reuse of predictive models for genomics

por Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S., Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur, Julien
Publicado 2019

Opportunities and obstacles for deep learning in biology and medicine

por Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Publicado 2018