GreenHill: a de novo chromosome-level scaffolding and phasing tool using Hi-C

por Ouchi, Shun, Kajitani, Rei, Itoh, Takehiko
Publicado 2023

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

por Noguchi, Hideki, Taniguchi, Takeaki, Itoh, Takehiko
Publicado 2008

Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes

por Yamabe, Takahiro, Kajitani, Rei, Toyoda, Atsushi, Itoh, Takehiko
Publicado 2023

Analysis of Sex Chromosome Evolution in the Clade Palaeognathae from Phased Genome Assembly

por Okuno, Miki, Mizushima, Shusei, Kuroiwa, Asato, Itoh, Takehiko
Publicado 2021

Complete genomes of mutualistic bacterial co-symbionts “Candidatus Sulcia muelleri” and “Candidatus Nasuia deltocephalinicola” of the rice green leafhopper Nephotettix cincticeps...

por Moriyama, Minoru, Nishide, Yudai, Toyoda, Atsushi, Itoh, Takehiko, Fukatsu, Takema
Publicado 2023

3D genomic architecture reveals that neocentromeres associate with heterochromatin regions

por Nishimura, Kohei, Komiya, Masataka, Hori, Tetsuya, Itoh, Takehiko, Fukagawa, Tatsuo
Publicado 2019

Evolutionary History of Sexual Differentiation Mechanism in Insects

por Chikami, Yasuhiko, Okuno, Miki, Toyoda, Atsushi, Itoh, Takehiko, Niimi, Teruyuki
Publicado 2022

Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization

por Okuno, Miki, Kajitani, Rei, Ryusui, Rie, Morimoto, Hiroya, Kodama, Yukiko, Itoh, Takehiko
Publicado 2016

Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error-removal process

por Kajitani, Rei, Yoshimura, Dai, Ogura, Yoshitoshi, Gotoh, Yasuhiro, Hayashi, Tetsuya, Itoh, Takehiko
Publicado 2020

Discovery and Complete Genome Sequence of a Bacteriophage from an Obligate Intracellular Symbiont of a Cellulolytic Protist in the Termite Gut

por Pramono, Ajeng K., Kuwahara, Hirokazu, Itoh, Takehiko, Toyoda, Atsushi, Yamada, Akinori, Hongoh, Yuichi
Publicado 2017

The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes

por Hirota, Kazuki, Yoshida, Masa-aki, Itoh, Takehiko, Toyoda, Atsushi, Setiamarga, Davin H. E.
Publicado 2021

Haplotype-resolved chromosomal-level assembly of wasabi (Eutrema japonicum) genome

por Tanaka, Hiroyuki, Hori, Tatsuki, Yamamoto, Shohei, Toyoda, Atsushi, Yano, Kentaro, Yamane, Kyoko, Itoh, Takehiko
Publicado 2023

Bioinformatic and fine-scale chromosomal mapping reveal the nature and evolution of eliminated chromosomes in the Japanese hagfish, Eptatretus burgeri, through analysis of repetiti...

por Nagao, Kohei, Tanaka, Yoshiki, Kajitani, Rei, Toyoda, Atsushi, Itoh, Takehiko, Kubota, Souichirou, Goto, Yuji
Publicado 2023

The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative an...

por Naito, Mariko, Ogura, Yoshitoshi, Itoh, Takehiko, Shoji, Mikio, Okamoto, Masaaki, Hayashi, Tetsuya, Nakayama, Koji
Publicado 2016

Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica

por Okuno, Miki, Miyamoto, Shuntaro, Itoh, Takehiko, Seki, Masahide, Suzuki, Yutaka, Mizushima, Shusei, Kuroiwa, Asato
Publicado 2020

Meiotic cohesins modulate chromosome compaction during meiotic prophase in fission yeast

por Ding, Da-Qiao, Sakurai, Nobuko, Katou, Yuki, Itoh, Takehiko, Shirahige, Katsuhiko, Haraguchi, Tokuko, Hiraoka, Yasushi
Publicado 2006

Parallel evolution of Batesian mimicry supergene in two Papilio butterflies, P. polytes and P. memnon

por Iijima, Takuro, Kajitani, Rei, Komata, Shinya, Lin, Chung-Ping, Sota, Teiji, Itoh, Takehiko, Fujiwara, Haruhiko
Publicado 2018

A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits

por Hirakawa, Hideki, Toyoda, Atsushi, Itoh, Takehiko, Suzuki, Yutaka, Nagano, Atsushi J, Sugiyama, Suguru, Onodera, Yasuyuki
Publicado 2021

Targeted base editing in the mitochondrial genome of Arabidopsis thaliana

por Nakazato, Issei, Okuno, Miki, Zhou, Chang, Itoh, Takehiko, Tsutsumi, Nobuhiro, Takenaka, Mizuki, Arimura, Shin-ichi
Publicado 2022

The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants

por Asadulghani, Md, Ogura, Yoshitoshi, Ooka, Tadasuke, Itoh, Takehiko, Sawaguchi, Akira, Iguchi, Atsushi, Nakayama, Keisuke, Hayashi, Tetsuya
Publicado 2009