RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea

por Mukai, Takahito, Crnković, Ana, Umehara, Takuya, Ivanova, Natalia N., Kyrpides, Nikos C., Söll, Dieter
Publicado 2017

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

por Hooper, Sean D., Dalevi, Daniel, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2010

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

por Mavromatis, Konstantinos, Ivanova, Natalia N., Chen, I-Min A., Szeto, Ernest, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2009

Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes

por Andreopoulos, William B, Geller, Alexander M, Lucke, Miriam, Balewski, Jan, Clum, Alicia, Ivanova, Natalia N, Levy, Asaf
Publicado 2021

Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics

por Baran, Richard, Ivanova, Natalia N., Jose, Nick, Garcia-Pichel, Ferran, Kyrpides, Nikos C., Gugger, Muriel, Northen, Trent R.
Publicado 2013

Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria

por Seshadri, Rekha, Reeve, Wayne G., Ardley, Julie K., Tennessen, Kristin, Woyke, Tanja, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2015

Improving Microbial Genome Annotations in an Integrated Database Context

por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Anderson, Iain, Mavromatis, Konstantinos, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2013

Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhab...

por Robertson, Raegan, Conrad, Katie, Ahuja, Baarik, Göker, Markus, Hahnke, Richard L., Spunde, Alex, Ivanova, Natalia N., Seshadri, Rekha, Stephens, Craig
Publicado 2023

A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey

por Reeve, Wayne, Ardley, Julie, Tian, Rui, Eshragi, Leila, Yoon, Je Won, Ngamwisetkun, Pinyaruk, Seshadri, Rekha, Ivanova, Natalia N, Kyrpides, Nikos C
Publicado 2015

Transfer RNAs with novel cloverleaf structures

por Mukai, Takahito, Vargas-Rodriguez, Oscar, Englert, Markus, Tripp, H. James, Ivanova, Natalia N., Rubin, Edward M., Kyrpides, Nikos C., Söll, Dieter
Publicado 2017

Towards a balanced view of the bacterial tree of life

por Schulz, Frederik, Eloe-Fadrosh, Emiley A., Bowers, Robert M., Jarett, Jessica, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C., Woyke, Tanja
Publicado 2017

Correction to: Towards a balanced view of the bacterial tree of life

por Schulz, Frederik, Eloe-Fadrosh, Emiley A., Bowers, Robert M., Jarett, Jessica, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C., Woyke, Tanja
Publicado 2017

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

por Hadjithomas, Michalis, Chen, I-Min A., Chu, Ken, Huang, Jinghua, Ratner, Anna, Palaniappan, Krishna, Andersen, Evan, Markowitz, Victor, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2017

The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader

por Lykidis, Athanasios, Pérez-Pantoja, Danilo, Ledger, Thomas, Mavromatis, Kostantinos, Anderson, Iain J., Ivanova, Natalia N., Hooper, Sean D., Lapidus, Alla, Lucas, Susan, González, Bernardo, Kyrpides, Nikos C.
Publicado 2010

Genome sequence of the Wenxinia marina type strain (DSM 24838(T)), a representative of the Roseobacter group isolated from oilfield sediments

por Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Spring, Stefan, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., Klenk, Hans-Peter
Publicado 2014

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, I...

por Susanti, Dwi, Johnson, Eric F., Lapidus, Alla, Han, James, Reddy, T. B. K., Pilay, Manoj, Ivanova, Natalia N., Markowitz, Victor M., Woyke, Tanja, Kyrpides, Nikos C., Mukhopadhyay, Biswarup
Publicado 2016

Genome-Based Taxonomic Classification of Bacteroidetes

por Hahnke, Richard L., Meier-Kolthoff, Jan P., García-López, Marina, Mukherjee, Supratim, Huntemann, Marcel, Ivanova, Natalia N., Woyke, Tanja, Kyrpides, Nikos C., Klenk, Hans-Peter, Göker, Markus
Publicado 2016

Corrigendum: Genome-Based Taxonomic Classification of Bacteroidetes

por Hahnke, Richard L., Meier-Kolthoff, Jan P., García-López, Marina, Mukherjee, Supratim, Huntemann, Marcel, Ivanova, Natalia N., Woyke, Tanja, Kyrpides, Nikos C., Klenk, Hans-Peter, Göker, Markus
Publicado 2018

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome

por Nayfach, Stephen, Páez-Espino, David, Call, Lee, Low, Soo Jen, Sberro, Hila, Ivanova, Natalia N., Proal, Amy D., Fischbach, Michael A., Bhatt, Ami S., Hugenholtz, Philip, Kyrpides, Nikos C.
Publicado 2021

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

por Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2008