Letter to the Editor

por Levan, Göran, Jacob, Howard J
Publicado 2006

The Rat Genome Database, update 2007—Easing the path from disease to data and back again

por Twigger, Simon N., Shimoyama, Mary, Bromberg, Susan, Kwitek, Anne E., Jacob, Howard J.
Publicado 2007

Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD

por Nigam, Rajni, Munzenmaier, Diane H, Worthey, Elizabeth A, Dwinell, Melinda R, Shimoyama, Mary, Jacob, Howard J
Publicado 2013

Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning

por McLaughlin, R. Tyler, Asthana, Maansi, Di Meo, Marc, Ceccarelli, Michele, Jacob, Howard J., Masica, David L.
Publicado 2023

Zinc-Finger Nuclease Knockout of Dual-Specificity Protein Phosphatase-5 Enhances the Myogenic Response and Autoregulation of Cerebral Blood Flow in FHH.1(BN) Rats

por Fan, Fan, Geurts, Aron M., Pabbidi, Mallikarjuna R., Smith, Stanley V., Harder, David R., Jacob, Howard, Roman, Richard J.
Publicado 2014

Using Multiple Ontologies to Integrate Complex Biological Data

por Shimoyama, Mary, Petri, Victoria, Pasko, Dean, Bromberg, Susan, Wu, Wenhua, Chen, Jiali, Nenasheva, Nataliya, Kwitek, Anne, Twigger, Simon, Jacob, Howard
Publicado 2005

Antithrombin III/SerpinC1 insufficiency exacerbates renal ischemia/reperfusion injury

por Wang, Feng, Zhang, Guangyuan, Lu, Zeyuan, Geurts, Aron M, Usa, Kristie, Jacob, Howard J, Cowley, Allen W, Wang, Niansong, Liang, Mingyu
Publicado 2015

RGD: A comparative genomics platform

por Shimoyama, Mary, Smith, Jennifer R, Hayman, Tom, Laulederkind, Stan, Lowry, Tim, Nigam, Rajni, Petri, Victoria, Wang, Shur-Jen, Dwinell, Melinda, Jacob, Howard
Publicado 2011

Comprehensive quality control utilizing the prehybridization third-dye image leads to accurate gene expression measurements by cDNA microarrays

por Wang, Xujing, Jia, Shuang, Meyer, Lisa, Xiang, Bixia, Chen, Li-Yen, Jiang, Nan, Moreno, Carol, Jacob, Howard J, Ghosh, Soumitra, Hessner, Martin J
Publicado 2006

Genetic dissection of lymphopenia from autoimmunity by introgression of mutated Ian5 gene onto the F344 rat

por Moralejo, Daniel H., Park, Hyunhee A., Speros, Sara J., MacMurray, Armand J., Kwitek, Anne E., Jacob, Howard J., Lander, Eric S., Lernmark, Åke
Publicado 2003

iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type–Specific Markers of Immune-Cell Infiltration

por Turan, Tolga, Kongpachith, Sarah, Halliwill, Kyle, McLaughlin, Robert T., Binnewies, Mikhail, Reddy, Dhemath, Zhao, Xi, Mathew, Rebecca, Ye, Shiming, Jacob, Howard J., Samayoa, Josue
Publicado 2023

A balance score between immune stimulatory and suppressive microenvironments identifies mediators of tumour immunity and predicts pan-cancer survival

por Turan, Tolga, Kongpachith, Sarah, Halliwill, Kyle, Roelands, Jessica, Hendrickx, Wouter, Marincola, Francesco M., Hudson, Thomas J., Jacob, Howard J., Bedognetti, Davide, Samayoa, Josue, Ceccarelli, Michele
Publicado 2020

Correction: A balance score between immune stimulatory and suppressive microenvironments identifies mediators of tumour immunity and predicts pan-cancer survival

por Turan, Tolga, Kongpachith, Sarah, Halliwill, Kyle, Roelands, Jessica, Hendrickx, Wouter, Marincola, Francesco M., Hudson, Thomas J., Jacob, Howard J., Bedognetti, Davide, Samayoa, Josue, Ceccarelli, Michele
Publicado 2020

The landscape of GWAS validation; systematic review identifying 309 validated non-coding variants across 130 human diseases

por Alsheikh, Ammar J., Wollenhaupt, Sabrina, King, Emily A., Reeb, Jonas, Ghosh, Sujana, Stolzenburg, Lindsay R., Tamim, Saleh, Lazar, Jozef, Davis, J. Wade, Jacob, Howard J.
Publicado 2022

The Rat Genome Database Pathway Portal

por Petri, Victoria, Shimoyama, Mary, Hayman, G. Thomas, Smith, Jennifer R., Tutaj, Marek, de Pons, Jeff, Dwinell, Melinda R., Munzenmaier, Diane H., Twigger, Simon N., Jacob, Howard J.
Publicado 2011

Identifying multiple causative genes at a single GWAS locus

por Flister, Michael J., Tsaih, Shirng-Wern, O'Meara, Caitlin C., Endres, Bradley, Hoffman, Matthew J., Geurts, Aron M., Dwinell, Melinda R., Lazar, Jozef, Jacob, Howard J., Moreno, Carol
Publicado 2013

Clinical diagnostic whole genome sequencing in a paediatric population: experience from our WGS genetics clinic

por Worthey, Elizabeth, Bick, David, Dimmock, David, Shimoyama, Mary, Veith, Regan, Kowalski, George, Taylor, Bradley, Wilk, Brandon, Tsaih, Sharon, Harris, Jeremy, Tschannen, Michael, Wendt-Andrae, Jaime, Brodie, Ken, Jacob, Howard
Publicado 2012

Characterization of human plasma-derived exosomal RNAs by deep sequencing

por Huang, Xiaoyi, Yuan, Tiezheng, Tschannen, Michael, Sun, Zhifu, Jacob, Howard, Du, Meijun, Liang, Meihua, Dittmar, Rachel L, Liu, Yong, Liang, Mingyu, Kohli, Manish, Thibodeau, Stephen N, Boardman, Lisa, Wang, Liang
Publicado 2013

The Rat Genome Database 2009: variation, ontologies and pathways

por Dwinell, Melinda R., Worthey, Elizabeth A., Shimoyama, Mary, Bakir-Gungor, Burcu, DePons, Jeffrey, Laulederkind, Stanley, Lowry, Timothy, Nigram, Rajni, Petri, Victoria, Smith, Jennifer, Stoddard, Alexander, Twigger, Simon N., Jacob, Howard J.
Publicado 2009

Disease pathways at the Rat Genome Database Pathway Portal: genes in context—a network approach to understanding the molecular mechanisms of disease

por Petri, Victoria, Hayman, G Thomas, Tutaj, Marek, Smith, Jennifer R, Laulederkind, Stanley JF, Wang, Shur-Jen, Nigam, Rajni, De Pons, Jeff, Shimoyama, Mary, Dwinell, Melinda R, Worthey, Elizabeth A, Jacob, Howard J
Publicado 2014