Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups

por Méheust, Raphaël, Castelle, Cindy J., Jaffe, Alexander L., Banfield, Jillian F.
Publicado 2022

Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea

por Jaffe, Alexander L, Castelle, Cindy J, Dupont, Christopher L, Banfield, Jillian F
Publicado 2019

The rise of diversity in metabolic platforms across the Candidate Phyla Radiation

por Jaffe, Alexander L., Castelle, Cindy J., Matheus Carnevali, Paula B., Gribaldo, Simonetta, Banfield, Jillian F.
Publicado 2020

Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea

por Castelle, Cindy J., Méheust, Raphaël, Jaffe, Alexander L., Seitz, Kiley, Gong, Xianzhe, Baker, Brett J., Banfield, Jillian F.
Publicado 2021

Soil Candidate Phyla Radiation Bacteria Encode Components of Aerobic Metabolism and Co-occur with Nanoarchaea in the Rare Biosphere of Rhizosphere Grassland Communities

por Nicolas, Alexa M., Jaffe, Alexander L., Nuccio, Erin E., Taga, Michiko E., Firestone, Mary K., Banfield, Jillian F.
Publicado 2021

Saccharibacteria harness light energy using type-1 rhodopsins that may rely on retinal sourced from microbial hosts

por Jaffe, Alexander L., Konno, Masae, Kawasaki, Yuma, Kataoka, Chihiro, Béjà, Oded, Kandori, Hideki, Inoue, Keiichi, Banfield, Jillian F.
Publicado 2022

Long-Term Incubation of Lake Water Enables Genomic Sampling of Consortia Involving Planctomycetes and Candidate Phyla Radiation Bacteria

por Jaffe, Alexander L., Fuster, Maxime, Schoelmerich, Marie C., Chen, Lin-Xing, Colombet, Jonathan, Billard, Hermine, Sime-Ngando, Télesphore, Banfield, Jillian F.
Publicado 2022

Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication

por Chen, Lin-Xing, Jaffe, Alexander L., Borges, Adair L., Penev, Petar I., Nelson, Tara Colenbrander, Warren, Lesley A., Banfield, Jillian F.
Publicado 2022

Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes

por Borges, Adair L., Lou, Yue Clare, Sachdeva, Rohan, Al-Shayeb, Basem, Penev, Petar I., Jaffe, Alexander L., Lei, Shufei, Santini, Joanne M., Banfield, Jillian F.
Publicado 2022

Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin

por Jaffe, Alexander L., Bardot, Corinne, Le Jeune, Anne-Hélène, Liu, Jett, Colombet, Jonathan, Perrière, Fanny, Billard, Hermine, Castelle, Cindy J., Lehours, Anne-Catherine, Banfield, Jillian F.
Publicado 2023

Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria

por Jaffe, Alexander L., Thomas, Alex D., He, Christine, Keren, Ray, Valentin-Alvarado, Luis E., Munk, Patrick, Bouma-Gregson, Keith, Farag, Ibrahim F., Amano, Yuki, Sachdeva, Rohan, West, Patrick T., Banfield, Jillian F.
Publicado 2021

Clades of huge phages from across Earth’s ecosystems

por Al-Shayeb, Basem, Sachdeva, Rohan, Chen, Lin-Xing, Ward, Fred, Munk, Patrick, Devoto, Audra, Castelle, Cindy J., Olm, Matthew R., Bouma-Gregson, Keith, Amano, Yuki, He, Christine, Méheust, Raphaël, Brooks, Brandon, Thomas, Alex, Lavy, Adi, Matheus-Carnevali, Paula, Sun, Christine, Goltsman, Daniela S. A., Borton, Mikayla A., Sharrar, Allison, Jaffe, Alexander L., Nelson, Tara C., Kantor, Rose, Keren, Ray, Lane, Katherine R., Farag, Ibrahim F., Lei, Shufei, Finstad, Kari, Amundson, Ronald, Anantharaman, Karthik, Zhou, Jinglie, Probst, Alexander J., Power, Mary E., Tringe, Susannah G., Li, Wen-Jun, Wrighton, Kelly, Harrison, Sue, Morowitz, Michael, Relman, David A., Doudna, Jennifer A., Lehours, Anne-Catherine, Warren, Lesley, Cate, Jamie H. D., Santini, Joanne M., Banfield, Jillian F.
Publicado 2020