Accounting for cellular heterogeneity is critical in epigenome-wide association studies

por Jaffe, Andrew E, Irizarry, Rafael A
Publicado 2014

Genetic and epigenetic analysis of schizophrenia in blood—a no-brainer?

por Jaffe, Andrew E., Kleinman, Joel E.
Publicado 2016

regionReport: Interactive reports for region-level and feature-level genomic analyses

por Collado-Torres, Leonardo, Jaffe, Andrew E., Leek, Jeffrey T.
Publicado 2016

recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor

por Collado-Torres, Leonardo, Nellore, Abhinav, Jaffe, Andrew E.
Publicado 2017

Cortical cellular diversity and development in schizophrenia: A survey of cortical development and the state of the art in profiling cell type-resolved transcriptomic and epigenomi...

por Price, Amanda J., Jaffe, Andrew E., Weinberger, Daniel R.
Publicado 2020

Gene set bagging for estimating the probability a statistically significant result will replicate

por Jaffe, Andrew E, Storey, John D, Ji, Hongkai, Leek, Jeffrey T
Publicado 2013

BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data

por Eagles, Nicholas J., Wilton, Richard, Jaffe, Andrew E., Collado-Torres, Leonardo
Publicado 2023

Addressing confounding artifacts in reconstruction of gene co-expression networks

por Parsana, Princy, Ruberman, Claire, Jaffe, Andrew E., Schatz, Michael C., Battle, Alexis, Leek, Jeffrey T.
Publicado 2019

Schizophrenia-Associated hERG channel Kv11.1-3.1 Exhibits a Unique Trafficking Deficit that is Rescued Through Proteasome Inhibition for High Throughput Screening

por Calcaterra, Nicholas E., Hoeppner, Daniel J., Wei, Huijun, Jaffe, Andrew E., Maher, Brady J., Barrow, James C.
Publicado 2016

Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex

por Jaffe, Andrew E., Gao, Yuan, Deep-Soboslay, Amy, Tao, Ran, Hyde, Thomas M., Weinberger, Daniel R., Kleinman, Joel E.
Publicado 2015

dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

por Maynard, Kristen R, Tippani, Madhavi, Takahashi, Yoichiro, Phan, BaDoi N, Hyde, Thomas M, Jaffe, Andrew E, Martinowich, Keri
Publicado 2020

TrkB Signaling Influences Gene Expression in Cortistatin-Expressing Interneurons

por Maynard, Kristen R., Kardian, Alisha, Hill, Julia L., Mai, Yishan, Barry, Brianna, Hallock, Henry L., Jaffe, Andrew E., Martinowich, Keri
Publicado 2020

Practical impacts of genomic data “cleaning” on biological discovery using surrogate variable analysis

por Jaffe, Andrew E., Hyde, Thomas, Kleinman, Joel, Weinbergern, Daniel R., Chenoweth, Joshua G., McKay, Ronald D., Leek, Jeffrey T., Colantuoni, Carlo
Publicado 2015

Erratum to: Practical impacts of genomic data “cleaning” on biological discovery using surrogate variable analysis

por Jaffe, Andrew E., Hyde, Thomas, Kleinman, Joel, Weinberger, Daniel R., Chenoweth, Joshua G., McKay, Ronald D., Leek, Jeffrey T., Colantuoni, Carlo
Publicado 2016

TE-array—a high throughput tool to study transposon transcription

por Gnanakkan, Veena P, Jaffe, Andrew E, Dai, Lixin, Fu, Jie, Wheelan, Sarah J, Levitsky, Hyam I, Boeke, Jef D, Burns, Kathleen H
Publicado 2013

DNA Methylation Profiling of Human Prefrontal Cortex Neurons in Heroin Users Shows Significant Difference between Genomic Contexts of Hyper- and Hypomethylation and a Younger Epige...

por Kozlenkov, Alexey, Jaffe, Andrew E., Timashpolsky, Alisa, Apontes, Pasha, Rudchenko, Sergei, Barbu, Mihaela, Byne, William, Hurd, Yasmin L., Horvath, Steve, Dracheva, Stella
Publicado 2017

Dysregulated systemic metabolism in a Down syndrome mouse model

por Sarver, Dylan C., Xu, Cheng, Velez, Leandro M., Aja, Susan, Jaffe, Andrew E., Seldin, Marcus M., Reeves, Roger H., Wong, G. William
Publicado 2022

Flexible expressed region analysis for RNA-seq with derfinder

por Collado-Torres, Leonardo, Nellore, Abhinav, Frazee, Alyssa C., Wilks, Christopher, Love, Michael I., Langmead, Ben, Irizarry, Rafael A., Leek, Jeffrey T., Jaffe, Andrew E.
Publicado 2017

Differential expression of NPAS4 in the dorsolateral prefrontal cortex following opioid overdose

por Sosnowski, David W., Jaffe, Andrew E., Tao, Ran, Deep-Soboslay, Amy, Shu, Chang, Sabunciyan, Sarven, Kleinman, Joel E., Hyde, Thomas M., Maher, Brion S.
Publicado 2022

Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses

por Kuri-Magaña, Helena, Collado-Torres, Leonardo, Jaffe, Andrew E., Valdovinos-Torres, Humberto, Ovilla-Muñoz, Marbella, Téllez-Sosa, Juan, Bonifaz, Laura C., Martínez-Barnetche, Jesús
Publicado 2018