R/parallel – speeding up bioinformatics analysis with R

por Vera, Gonzalo, Jansen, Ritsert C, Suppi, Remo L
Publicado 2008

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

por Tesson, Bruno M, Breitling, Rainer, Jansen, Ritsert C
Publicado 2010

RNAi Experiments in D. melanogaster: Solutions to the Overlooked Problem of Off-Targets Shared by Independent dsRNAs

por Seinen, Erwin, Burgerhof, Johannes G. M., Jansen, Ritsert C., Sibon, Ody C. M.
Publicado 2010

FitTetra 2.0 – improved genotype calling for tetraploids with multiple population and parental data support

por Zych, Konrad, Gort, Gerrit, Maliepaard, Chris A., Jansen, Ritsert C., Voorrips, Roeland E.
Publicado 2019

Sequence Polymorphisms Cause Many False cis eQTLs

por Alberts, Rudi, Terpstra, Peter, Li, Yang, Breitling, Rainer, Nap, Jan-Peter, Jansen, Ritsert C.
Publicado 2007

designGG: an R-package and web tool for the optimal design of genetical genomics experiments

por Li, Yang, Swertz, Morris A, Vera, Gonzalo, Fu, Jingyuan, Breitling, Rainer, Jansen, Ritsert C
Publicado 2009

SIMAGE: simulation of DNA-microarray gene expression data

por Albers, Casper J, Jansen, Ritsert C, Kok, Jan, Kuipers, Oscar P, van Hijum, Sacha AFT
Publicado 2006

Worm variation made accessible: Take your shopping cart to store, link, and investigate!

por Snoek, L Basten, Joeri van der Velde, K, Li, Yang, Jansen, Ritsert C, Swertz, Morris A, Kammenga, Jan E
Publicado 2014

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains

por Zych, Konrad, Li, Yang, van der Velde, Joeri K, Joosen, Ronny VL, Ligterink, Wilco, Jansen, Ritsert C, Arends, Danny
Publicado 2015

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat

por Alberts, Rudi, Terpstra, Peter, Hardonk, Menno, Bystrykh, Leonid V, de Haan, Gerald, Breitling, Rainer, Nap, Jan-Peter, Jansen, Ritsert C
Publicado 2007

Association testing by haplotype-sharing methods applicable to whole-genome analysis

por Nolte, Ilja M, de Vries, André R, Spijker, Geert T, Jansen, Ritsert C, Brinza, Dumitru, Zelikovsky, Alexander, te Meerman, Gerard J
Publicado 2007

xQTL workbench: a scalable web environment for multi-level QTL analysis

por Arends, Danny, van der Velde, K. Joeri, Prins, Pjotr, Broman, Karl W., Möller, Steffen, Jansen, Ritsert C., Swertz, Morris A.
Publicado 2012

Quantile-Based Permutation Thresholds for Quantitative Trait Loci Hotspots

por Neto, Elias Chaibub, Keller, Mark P., Broman, Andrew F., Attie, Alan D., Jansen, Ritsert C., Broman, Karl W., Yandell, Brian S.
Publicado 2012

Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs

por Durrant, Caroline, Swertz, Morris A., Alberts, Rudi, Arends, Danny, Möller, Steffen, Mott, Richard, Prins, Pjotr, van der Velde, K. Joeri, Jansen, Ritsert C., Schughart, Klaus
Publicado 2012

Expression Quantitative Trait Loci Are Highly Sensitive to Cellular Differentiation State

por Gerrits, Alice, Li, Yang, Tesson, Bruno M., Bystrykh, Leonid V., Weersing, Ellen, Ausema, Albertina, Dontje, Bert, Wang, Xusheng, Breitling, Rainer, Jansen, Ritsert C., de Haan, Gerald
Publicado 2009

WormQTL(HD)—a web database for linking human disease to natural variation data in C. elegans

por van der Velde, K. Joeri, de Haan, Mark, Zych, Konrad, Arends, Danny, Snoek, L. Basten, Kammenga, Jan E., Jansen, Ritsert C., Swertz, Morris A., Li, Yang
Publicado 2014

Genetical Genomics: Spotlight on QTL Hotspots

por Breitling, Rainer, Li, Yang, Tesson, Bruno M., Fu, Jingyuan, Wu, Chunlei, Wiltshire, Tim, Gerrits, Alice, Bystrykh, Leonid V., de Haan, Gerald, Su, Andrew I., Jansen, Ritsert C.
Publicado 2008

Complex nature of SNP genotype effects on gene expression in primary human leucocytes

por Heap, Graham A, Trynka, Gosia, Jansen, Ritsert C, Bruinenberg, Marcel, Swertz, Morris A, Dinesen, Lotte C, Hunt, Karen A, Wijmenga, Cisca, vanHeel, David A, Franke, Lude
Publicado 2009

Regulatory Network of Secondary Metabolism in Brassica rapa: Insight into the Glucosinolate Pathway

por Pino Del Carpio, Dunia, Basnet, Ram Kumar, Arends, Danny, Lin, Ke, De Vos, Ric C. H., Muth, Dorota, Kodde, Jan, Boutilier, Kim, Bucher, Johan, Wang, Xiaowu, Jansen, Ritsert, Bonnema, Guusje
Publicado 2014

Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans

por Li, Yang, Álvarez, Olga Alda, Gutteling, Evert W, Tijsterman, Marcel, Fu, Jingyuan, Riksen, Joost A. G, Hazendonk, Esther, Prins, Pjotr, Plasterk, Ronald H. A, Jansen, Ritsert C, Breitling, Rainer, Kammenga, Jan E
Publicado 2006