Individual-based simulation of the spatial and temporal dynamics of macroinvertebrate functional groups provides insights into benthic community assembly mechanisms

por Alexandridis, Nikolaos, Bacher, Cédric, Desroy, Nicolas, Jean, Fred
Publicado 2018

Computing expectation values for RNA motifs using discrete convolutions

por Lambert, André, Legendre, Matthieu, Fontaine, Jean-Fred, Gautheret, Daniel
Publicado 2005

Linking individual and population patterns of rocky-shore mussels

por Barbosa, Romina Vanessa, Bacher, Cédric, Jean, Fred, Thomas, Yoann
Publicado 2021

Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality

por Sprang, Maximilian, Andrade-Navarro, Miguel A., Fontaine, Jean-Fred
Publicado 2022

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets

por Taškova, Katerina, Fontaine, Jean-Fred, Mrowka, Ralf, Andrade-Navarro, Miguel A.
Publicado 2019

Computational identification of cell-specific variable regions in ChIP-seq data

por Andreani, Tommaso, Albrecht, Steffen, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A
Publicado 2020

seqQscorer: automated quality control of next-generation sequencing data using machine learning

por Albrecht, Steffen, Sprang, Maximilian, Andrade-Navarro, Miguel A., Fontaine, Jean-Fred
Publicado 2021

Statistical guidelines for quality control of next-generation sequencing techniques

por Sprang, Maximilian, Krüger, Matteo, Andrade-Navarro, Miguel A, Fontaine, Jean-Fred
Publicado 2021

Single-cell specific and interpretable machine learning models for sparse scChIP-seq data imputation

por Albrecht, Steffen, Andreani, Tommaso, Andrade-Navarro, Miguel A., Fontaine, Jean Fred
Publicado 2022

Génie: literature-based gene prioritization at multi genomic scale

por Fontaine, Jean-Fred, Priller, Florian, Barbosa-Silva, Adriano, Andrade-Navarro, Miguel A.
Publicado 2011

Using cited references to improve the retrieval of related biomedical documents

por Ortuño, Francisco M, Rojas, Ignacio, Andrade-Navarro, Miguel A, Fontaine, Jean-Fred
Publicado 2013

LipiDisease: associate lipids to diseases using literature mining

por More, Piyush, Bindila, Laura, Wild, Philipp, Andrade-Navarro, Miguel, Fontaine, Jean-Fred
Publicado 2021

DiseaseLinc: Disease Enrichment Analysis of Sets of Differentially Expressed LincRNAs

por More, Piyush, Talyan, Sweta, Fontaine, Jean-Fred, Muro, Enrique M., Andrade-Navarro, Miguel A.
Publicado 2021

HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores

por Schaefer, Martin H., Fontaine, Jean-Fred, Vinayagam, Arunachalam, Porras, Pablo, Wanker, Erich E., Andrade-Navarro, Miguel A.
Publicado 2012

Annotation and Analysis of 3902 Odorant Receptor Protein Sequences from 21 Insect Species Provide Insights into the Evolution of Odorant Receptor Gene Families in Solitary and Soci...

por Mier, Pablo, Fontaine, Jean-Fred, Stoldt, Marah, Libbrecht, Romain, Martelli, Carlotta, Foitzik, Susanne, Andrade-Navarro, Miguel A.
Publicado 2022

MedlineRanker: flexible ranking of biomedical literature

por Fontaine, Jean-Fred, Barbosa-Silva, Adriano, Schaefer, Martin, Huska, Matthew R., Muro, Enrique M., Andrade-Navarro, Miguel A.
Publicado 2009

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries

por Barbosa-Silva, Adriano, Fontaine, Jean-Fred, Donnard, Elisa R, Stussi, Fernanda, Ortega, J Miguel, Andrade-Navarro, Miguel A
Publicado 2011

Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts

por Neves, Mariana, Damaschun, Alexander, Mah, Nancy, Lekschas, Fritz, Seltmann, Stefanie, Stachelscheid, Harald, Fontaine, Jean-Fred, Kurtz, Andreas, Leser, Ulf
Publicado 2013

Deciphering the molecular adaptation of the king scallop (Pecten maximus) to heat stress using transcriptomics and proteomics

por Artigaud, Sébastien, Richard, Joëlle, Thorne, Michael AS, Lavaud, Romain, Flye-Sainte-Marie, Jonathan, Jean, Fred, Peck, Lloyd S., Clark, Melody S., Pichereau, Vianney
Publicado 2015

CELDA – an ontology for the comprehensive representation of cells in complex systems

por Seltmann, Stefanie, Stachelscheid, Harald, Damaschun, Alexander, Jansen, Ludger, Lekschas, Fritz, Fontaine, Jean-Fred, Nguyen-Dobinsky, Throng Nghia, Leser, Ulf, Kurtz, Andreas
Publicado 2013