Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples

por Ji, Shuangxi, Zhu, Tong, Sethia, Ankit, Wang, Wenyi
Publicado 2023

DeepCDpred: Inter-residue distance and contact prediction for improved prediction of protein structure

por Ji, Shuangxi, Oruç, Tuğçe, Mead, Liam, Rehman, Muhammad Fayyaz, Thomas, Christopher Morton, Butterworth, Sam, Winn, Peter James
Publicado 2019

DeMixSC: a deconvolution framework that uses single-cell sequencing plus a small benchmark dataset for improved analysis of cell-type ratios in complex tissue samples

por Guo, Shuai, Liu, Xiaoqian, Cheng, Xuesen, Jiang, Yujie, Ji, Shuangxi, Liang, Qingnan, Koval, Andrew, Li, Yumei, Owen, Leah A., Kim, Ivana K., Aparicio, Ana, Shen, John Paul, Kopetz, Scott, Weinstein, John N., DeAngelis, Margaret M., Chen, Rui, Wang, Wenyi
Publicado 2023

Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression

por Cao, Shaolong, Wang, Jennifer R., Ji, Shuangxi, Yang, Peng, Dai, Yaoyi, Guo, Shuai, Montierth, Matthew D., Shen, John Paul, Zhao, Xiao, Chen, Jingxiao, Lee, Jaewon James, Guerrero, Paola A., Spetsieris, Nicholas, Engedal, Nikolai, Taavitsainen, Sinja, Yu, Kaixian, Livingstone, Julie, Bhandari, Vinayak, Hubert, Shawna M., Daw, Najat C., Futreal, P. Andrew, Efstathiou, Eleni, Lim, Bora, Viale, Andrea, Zhang, Jianjun, Nykter, Matti, Czerniak, Bogdan A., Brown, Powel H., Swanton, Charles, Msaouel, Pavlos, Maitra, Anirban, Kopetz, Scott, Campbell, Peter, Speed, Terence P., Boutros, Paul C., Zhu, Hongtu, Urbanucci, Alfonso, Demeulemeester, Jonas, Van Loo, Peter, Wang, Wenyi
Publicado 2022