Design of pilot studies to inform the construction of composite outcome measures

por Edland, Steven D., Ard, M. Colin, Li, Weiwei, Jiang, Lingjing
Publicado 2017

Vitamin D Metabolites and the Gut Microbiome in Older Men

por Kado, Deborah, Thomas, Robert, Jiang, Lingjing, Adams, John, Knight, Rob, Orwoll, Eric
Publicado 2020

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes

por Jiang, Lingjing, Amir, Amnon, Morton, James T., Heller, Ruth, Arias-Castro, Ery, Knight, Rob
Publicado 2017

Host variables confound gut microbiota studies of human disease

por Vujkovic-Cvijin, Ivan, Sklar, Jack, Jiang, Lingjing, Natarajan, Loki, Knight, Rob, Belkaid, Yasmine
Publicado 2020

Biologic Mechanisms of Macrophage Phenotypes Responding to Infection and the Novel Therapies to Moderate Inflammation

por Ni, Renhao, Jiang, Lingjing, Zhang, Chaohai, Liu, Mujie, Luo, Yang, Hu, Zeming, Mou, Xianbo, Zhu, Yabin
Publicado 2023

FOXD1 expression-based prognostic model for uveal melanoma

por Luo, Yang, Ni, Renhao, Jin, Xiaojun, Feng, Peipei, Dai, Chenyi, Jiang, Lingjing, Chen, Pingping, Yang, Lu, Zhu, Yabin
Publicado 2023

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

por Mills, Robert H., Vázquez-Baeza, Yoshiki, Zhu, Qiyun, Jiang, Lingjing, Gaffney, James, Humphrey, Greg, Smarr, Larry, Knight, Rob, Gonzalez, David J.
Publicado 2019

Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data

por Jiang, Lingjing, Haiminen, Niina, Carrieri, Anna‐Paola, Huang, Shi, Vázquez‐Baeza, Yoshiki, Parida, Laxmi, Kim, Ho‐Cheol, Swafford, Austin D., Knight, Rob, Natarajan, Loki
Publicado 2021

Calour: an Interactive, Microbe-Centric Analysis Tool

por Xu, Zhenjiang Zech, Amir, Amnon, Sanders, Jon, Zhu, Qiyun, Morton, James T., Bletz, Molly C., Tripathi, Anupriya, Huang, Shi, McDonald, Daniel, Jiang, Lingjing, Knight, Rob
Publicado 2019

Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases

por Rahman, Gibraan, McDonald, Daniel, Gonzalez, Antonio, Vázquez-Baeza, Yoshiki, Jiang, Lingjing, Casals-Pascual, Climent, Hakim, Daniel, Dilmore, Amanda Hazel, Nowinski, Brent, Peddada, Shyamal, Knight, Rob
Publicado 2023

Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome

por Xue, Jin, Allaband, Celeste, Zhou, Dan, Poulsen, Orit, Martino, Cameron, Jiang, Lingjing, Tripathi, Anupriya, Elijah, Emmanuel, Dorrestein, Pieter C., Knight, Rob, Zarrinpar, Amir, Haddad, Gabriel G.
Publicado 2021

Vitamin D metabolites and the gut microbiome in older men

por Thomas, Robert L., Jiang, Lingjing, Adams, John S., Xu, Zhenjiang Zech, Shen, Jian, Janssen, Stefan, Ackermann, Gail, Vanderschueren, Dirk, Pauwels, Steven, Knight, Rob, Orwoll, Eric S., Kado, Deborah M.
Publicado 2020

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

por Janssen, Stefan, McDonald, Daniel, Gonzalez, Antonio, Navas-Molina, Jose A., Jiang, Lingjing, Xu, Zhenjiang Zech, Winker, Kevin, Kado, Deborah M., Orwoll, Eric, Manary, Mark, Mirarab, Siavash, Knight, Rob
Publicado 2018

Context-aware dimensionality reduction deconvolutes gut microbial community dynamics

por Martino, Cameron, Shenhav, Liat, Marotz, Clarisse, Armstrong, George, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Morton, James T., Jiang, Lingjing, Dominguez-Bello, Maria Gloria, Swafford, Austin D., Halperin, Eran, Knight, Rob
Publicado 2020

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome

por Tripathi, Anupriya, Melnik, Alexey V., Xue, Jin, Poulsen, Orit, Meehan, Michael J., Humphrey, Gregory, Jiang, Lingjing, Ackermann, Gail, McDonald, Daniel, Zhou, Dan, Knight, Rob, Dorrestein, Pieter C., Haddad, Gabriel G.
Publicado 2018

QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

por Estaki, Mehrbod, Jiang, Lingjing, Bokulich, Nicholas A., McDonald, Daniel, González, Antonio, Kosciolek, Tomasz, Martino, Cameron, Zhu, Qiyun, Birmingham, Amanda, Vázquez‐Baeza, Yoshiki, Dillon, Matthew R., Bolyen, Evan, Caporaso, J. Gregory, Knight, Rob
Publicado 2020

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

por Raghuvanshi, Ruma, Vasco, Karla, Vázquez-Baeza, Yoshiki, Jiang, Lingjing, Morton, James T., Li, Danxun, Gonzalez, Antonio, DeRight Goldasich, Lindsay, Humphrey, Gregory, Ackermann, Gail, Swafford, Austin D., Conrad, Douglas, Knight, Rob, Dorrestein, Pieter C., Quinn, Robert A.
Publicado 2020

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

por Huang, Shi, Haiminen, Niina, Carrieri, Anna-Paola, Hu, Rebecca, Jiang, Lingjing, Parida, Laxmi, Russell, Baylee, Allaband, Celeste, Zarrinpar, Amir, Vázquez-Baeza, Yoshiki, Belda-Ferre, Pedro, Zhou, Hongwei, Kim, Ho-Cheol, Swafford, Austin D., Knight, Rob, Xu, Zhenjiang Zech
Publicado 2020

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

por Taylor, Bryn C., Lejzerowicz, Franck, Poirel, Marion, Shaffer, Justin P., Jiang, Lingjing, Aksenov, Alexander, Litwin, Nicole, Humphrey, Gregory, Martino, Cameron, Miller-Montgomery, Sandrine, Dorrestein, Pieter C., Veiga, Patrick, Song, Se Jin, McDonald, Daniel, Derrien, Muriel, Knight, Rob
Publicado 2020

Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India

por Huey, Samantha L., Jiang, Lingjing, Fedarko, Marcus W., McDonald, Daniel, Martino, Cameron, Ali, Farhana, Russell, David G., Udipi, Shobha A., Thorat, Aparna, Thakker, Varsha, Ghugre, Padmini, Potdar, R. D., Chopra, Harsha, Rajagopalan, Kripa, Haas, Jere D., Finkelstein, Julia L., Knight, Rob, Mehta, Saurabh
Publicado 2020