Teaching the Fundamentals of Biological Data Integration Using Classroom Games

por Schneider, Maria Victoria, Jimenez, Rafael C.
Publicado 2012

KEGGViewer, a BioJS component to visualize KEGG Pathways

por Villaveces, Jose M., Jimenez, Rafael C., Habermann, Bianca H.
Publicado 2014

PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers

por Villaveces, Jose M., Jimenez, Rafael C., Habermann, Bianca H.
Publicado 2014

General guidelines for biomedical software development

por Silva, Luis Bastiao, Jimenez, Rafael C., Blomberg, Niklas, Luis Oliveira, José
Publicado 2017

Data integration in biological research: an overview

por Lapatas, Vasileios, Stefanidakis, Michalis, Jimenez, Rafael C., Via, Allegra, Schneider, Maria Victoria
Publicado 2015

wigExplorer, a BioJS component to visualise wig data

por Thanki, Anil S., Jimenez, Rafael C., Kaithakottil, Gemy G., Corpas, Manuel, Davey, Robert P.
Publicado 2016

OntoDas – a tool for facilitating the construction of complex queries to the Gene Ontology

por O'Neill, Kieran, Garcia, Alexander, Schwegmann, Anita, Jimenez, Rafael C, Jacobson, Dan, Hermjakob, Henning
Publicado 2008

easyDAS: Automatic creation of DAS servers

por Gel Moreno, Bernat, Jenkinson, Andrew M, Jimenez, Rafael C, Messeguer Peypoch, Xavier, Hermjakob, Henning
Publicado 2011

DAS Writeback: A Collaborative Annotation System

por Salazar, Gustavo A, Jimenez, Rafael C, Garcia, Alexander, Hermjakob, Henning, Mulder, Nicola, Blake, Edwin
Publicado 2011

myKaryoView: A Light-Weight Client for Visualization of Genomic Data

por Jimenez, Rafael C., Salazar, Gustavo A., Gel, Bernat, Dopazo, Joaquin, Mulder, Nicola, Corpas, Manuel
Publicado 2011

Dasty3, a WEB framework for DAS

por Villaveces, Jose M., Jimenez, Rafael C., Garcia, Leyla J., Salazar, Gustavo A., Gel, Bernat, Mulder, Nicola, Martin, Maria, Garcia, Alexander, Hermjakob, Henning
Publicado 2011

A new reference implementation of the PSICQUIC web service

por del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Publicado 2013

MyDas, an Extensible Java DAS Server

por Salazar, Gustavo A., García, Leyla J., Jones, Philip, Jimenez, Rafael C., Quinn, Antony F., Jenkinson, Andrew M., Mulder, Nicola, Martin, Maria, Hunter, Sarah, Hermjakob, Henning
Publicado 2012

Top 10 metrics for life science software good practices

por Artaza, Haydee, Chue Hong, Neil, Corpas, Manuel, Corpuz, Angel, Hooft, Rob, Jimenez, Rafael C., Leskošek, Brane, Olivier, Brett G., Stourac, Jan, Svobodová Vařeková, Radka, Van Parys, Thomas, Vaughan, Daniel
Publicado 2016

Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis

por Duarte, Afonso M. S., Psomopoulos, Fotis E., Blanchet, Christophe, Bonvin, Alexandre M. J. J., Corpas, Manuel, Franc, Alain, Jimenez, Rafael C., de Lucas, Jesus M., Nyrönen, Tommi, Sipos, Gergely, Suhr, Stephanie B.
Publicado 2015

Integrating biological data – the Distributed Annotation System

por Jenkinson, Andrew M, Albrecht, Mario, Birney, Ewan, Blankenburg, Hagen, Down, Thomas, Finn, Robert D, Hermjakob, Henning, Hubbard, Tim JP, Jimenez, Rafael C, Jones, Philip, Kähäri, Andreas, Kulesha, Eugene, Macías, José R, Reeves, Gabrielle A, Prlić, Andreas
Publicado 2008

Recommendations for the packaging and containerizing of bioinformatics software

por Gruening, Bjorn, Sallou, Olivier, Moreno, Pablo, da Veiga Leprevost, Felipe, Ménager, Hervé, Søndergaard, Dan, Röst, Hannes, Sachsenberg, Timo, O'Connor, Brian, Madeira, Fábio, Dominguez Del Angel, Victoria, Crusoe, Michael R., Varma, Susheel, Blankenberg, Daniel, Jimenez, Rafael C., Perez-Riverol, Yasset
Publicado 2019

BioContainers: an open-source and community-driven framework for software standardization

por da Veiga Leprevost, Felipe, Grüning, Björn A, Alves Aflitos, Saulo, Röst, Hannes L, Uszkoreit, Julian, Barsnes, Harald, Vaudel, Marc, Moreno, Pablo, Gatto, Laurent, Weber, Jonas, Bai, Mingze, Jimenez, Rafael C, Sachsenberg, Timo, Pfeuffer, Julianus, Vera Alvarez, Roberto, Griss, Johannes, Nesvizhskii, Alexey I, Perez-Riverol, Yasset
Publicado 2017

The IntAct molecular interaction database in 2012

por Kerrien, Samuel, Aranda, Bruno, Breuza, Lionel, Bridge, Alan, Broackes-Carter, Fiona, Chen, Carol, Duesbury, Margaret, Dumousseau, Marine, Feuermann, Marc, Hinz, Ursula, Jandrasits, Christine, Jimenez, Rafael C., Khadake, Jyoti, Mahadevan, Usha, Masson, Patrick, Pedruzzi, Ivo, Pfeiffenberger, Eric, Porras, Pablo, Raghunath, Arathi, Roechert, Bernd, Orchard, Sandra, Hermjakob, Henning
Publicado 2012

Best practices in bioinformatics training for life scientists

por Via, Allegra, Blicher, Thomas, Bongcam-Rudloff, Erik, Brazas, Michelle D., Brooksbank, Cath, Budd, Aidan, De Las Rivas, Javier, Dreyer, Jacqueline, Fernandes, Pedro L., van Gelder, Celia, Jacob, Joachim, Jimenez, Rafael C., Loveland, Jane, Moran, Federico, Mulder, Nicola, Nyrönen, Tommi, Rother, Kristian, Schneider, Maria Victoria, Attwood, Teresa K.
Publicado 2013