Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis

por Jiménez-Jacinto, Verónica, Sanchez-Flores, Alejandro, Vega-Alvarado, Leticia
Publicado 2019

Transcriptome analysis of the spider Phonotimpus pennimani reveals novel toxin transcripts

por Baza-Moreno, Jonathan David, Vega-Alvarado, Leticia, Ibarra-Núñez, Guillermo, Guillén-Navarro, Karina, García-Fajardo, Luz Verónica, Jiménez-Jacinto, Verónica, Diego-García, Elia
Publicado 2023

Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusari...

por Solano-De la Cruz, Marco Tulio, Adame-García, Jacel, Gregorio-Jorge, Josefat, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, Iglesias-Andreu, Lourdes Georgina, Escobar-Hernández, Esteban Elías, Luna-Rodríguez, Mauricio
Publicado 2019

Assembly and Analysis of Haemonchus contortus Transcriptome as a Tool for the Knowledge of Ivermectin Resistance Mechanisms

por Reyes-Guerrero, David Emanuel, Jiménez-Jacinto, Verónica, Alonso-Morales, Rogelio Alejandro, Alonso-Díaz, Miguel Ángel, Maza-Lopez, Jocelyn, Camas-Pereyra, René, Olmedo-Juárez, Agustín, Higuera-Piedrahita, Rosa Isabel, López-Arellano, María Eugenia
Publicado 2023

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

por Mendoza-Vargas, Alfredo, Olvera, Leticia, Olvera, Maricela, Grande, Ricardo, Vega-Alvarado, Leticia, Taboada, Blanca, Jimenez-Jacinto, Verónica, Salgado, Heladia, Juárez, Katy, Contreras-Moreira, Bruno, Huerta, Araceli M., Collado-Vides, Julio, Morett, Enrique
Publicado 2009

Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes

por González, Luis Miguel, Estrada, Karel, Grande, Ricardo, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, Sevilla, Elena, de la Barrera, Jorge, Cuesta, Isabel, Zaballos, Ángel, Bautista, José Manuel, Lobo, Cheryl A., Sánchez-Flores, Alejandro, Montero, Estrella
Publicado 2019

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

por Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, Martínez-Flores, Irma, Jiménez-Jacinto, Verónica, Bonavides-Martínez, César, Segura-Salazar, Juan, Martínez-Antonio, Agustino, Collado-Vides, Julio
Publicado 2006

Argonaute5 and its associated small RNAs modulate the transcriptional response during the rhizobia-Phaseolus vulgaris symbiosis

por Sánchez-Correa, María del Socorro, Isidra-Arellano, Mariel C., Pozas-Rodríguez, Eithan A., Reyero-Saavedra, María del Rocío, Morales-Salazar, Alfredo, del Castillo, Sarah Melissa Lugo-Caro, Sanchez-Flores, Alejandro, Jiménez-Jacinto, Verónica, Reyes, Jose L., Formey, Damien, Valdés-López, Oswaldo
Publicado 2022

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

por Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I., Contreras-Moreira, Bruno, Segura-Salazar, Juan, Muñiz-Rascado, Luis, Martínez-Flores, Irma, Salgado, Heladia, Bonavides-Martínez, César, Abreu-Goodger, Cei, Rodríguez-Penagos, Carlos, Miranda-Ríos, Juan, Morett, Enrique, Merino, Enrique, Huerta, Araceli M., Treviño-Quintanilla, Luis, Collado-Vides, Julio
Publicado 2008

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

por Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S., López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M., Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio
Publicado 2011

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

por Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S., Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M., Bonavides-Martínez, César, Balderas-Martínez, Yalbi I., Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
Publicado 2013

BioPAX – A community standard for pathway data sharing

por Demir, Emek, Cary, Michael P., Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D’Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C., Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Ozgun, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H., Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S., Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Le Novère, Nicolas, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D., Sander, Chris, Bader, Gary D.
Publicado 2010