Pattern of Amino Acid Substitutions in Transmembrane Domains of β-Barrel Membrane Proteins for Detecting Remote Homologs in Bacteria and Mitochondria

por Jimenez-Morales, David, Liang, Jie
Publicado 2011

Murine blastocysts generated by in vitro fertilization show increased Warburg metabolism and altered lactate production

por Lee, Seok Hee, Liu, Xiaowei, Jimenez-Morales, David, Rinaudo, Paolo F
Publicado 2022

Cross-family small GTPase ubiquitination by the intracellular pathogen Legionella pneumophila

por Steinbach, Adriana M., Bhadkamkar, Varun L., Jimenez-Morales, David, Stevenson, Erica, Jang, Gwendolyn M., Krogan, Nevan J., Swaney, Danielle L., Mukherjee, Shaeri
Publicado 2023

Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function

por Orr, Adam L., Kim, Chaeyoung, Jimenez-Morales, David, Newton, Billy W., Johnson, Jeffrey R., Krogan, Nevan J., Swaney, Danielle L., Mahley, Robert W.
Publicado 2019

Sympathetic inputs regulate adaptive thermogenesis in brown adipose tissue through cAMP-Salt inducible kinase axis

por Paulo, Esther, Wu, Dongmei, Wang, Yangmeng, Zhang, Yun, Wu, Yixuan, Swaney, Danielle L., Soucheray, Margaret, Jimenez-Morales, David, Chawla, Ajay, Krogan, Nevan J., Wang, Biao
Publicado 2018

Endosomal cAMP production broadly impacts the cellular phosphoproteome

por Tsvetanova, Nikoleta G., Trester-Zedlitz, Michelle, Newton, Billy W., Peng, Grace E., Johnson, Jeffrey R., Jimenez-Morales, David, Kurland, Andrew P., Krogan, Nevan J., von Zastrow, Mark
Publicado 2021

The Cellular NMD Pathway Restricts Zika Virus Infection and Is Targeted by the Viral Capsid Protein

por Fontaine, Krystal A., Leon, Kristoffer E., Khalid, Mir M., Tomar, Sakshi, Jimenez-Morales, David, Dunlap, Mariah, Kaye, Julia A., Shah, Priya S., Finkbeiner, Steve, Krogan, Nevan J., Ott, Melanie
Publicado 2018

Dynamic post-translational modification profiling of Mycobacterium tuberculosis-infected primary macrophages

por Budzik, Jonathan M, Swaney, Danielle L, Jimenez-Morales, David, Johnson, Jeffrey R, Garelis, Nicholas E, Repasy, Teresa, Roberts, Allison W, Popov, Lauren M, Parry, Trevor J, Pratt, Dexter, Ideker, Trey, Krogan, Nevan J, Cox, Jeffery S
Publicado 2020

Quantitative Proteomic Analysis Reveals apoE4-Dependent Phosphorylation of the Actin-Regulating Protein VASP

por Cakir, Zeynep, Lord, Samuel J., Zhou, Yuan, Jang, Gwendolyn M., Polacco, Benjamin J., Eckhardt, Manon, Jimenez-Morales, David, Newton, Billy W., Orr, Adam L., Johnson, Jeffrey R., da Cruz, Alexandre, Mullins, R. Dyche, Krogan, Nevan J., Mahley, Robert W., Swaney, Danielle L.
Publicado 2023

Ceragenins and Antimicrobial Peptides Kill Bacteria through Distinct Mechanisms

por Mitchell, Gabriel, Silvis, Melanie R., Talkington, Kelsey C., Budzik, Jonathan M., Dodd, Claire E., Paluba, Justin M., Oki, Erika A., Trotta, Kristine L., Licht, Daniel J., Jimenez-Morales, David, Chou, Seemay, Savage, Paul B., Gross, Carol A., Marletta, Michael A., Cox, Jeffery S.
Publicado 2022

Nuclear accumulation of host transcripts during Zika Virus Infection

por Leon, Kristoffer E., Khalid, Mir M., Flynn, Ryan A., Fontaine, Krystal A., Nguyen, Thong T., Kumar, G. Renuka, Simoneau, Camille R., Tomar, Sakshi, Jimenez-Morales, David, Dunlap, Mariah, Kaye, Julia, Shah, Priya S., Finkbeiner, Steven, Krogan, Nevan J., Bertozzi, Carolyn, Carette, Jan E., Ott, Melanie
Publicado 2023

Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19

por Wilk, Aaron J., Lee, Madeline J., Wei, Bei, Parks, Benjamin, Pi, Ruoxi, Martínez-Colón, Giovanny J., Ranganath, Thanmayi, Zhao, Nancy Q., Taylor, Shalina, Becker, Winston, Jimenez-Morales, David, Blomkalns, Andra L., O’Hara, Ruth, Ashley, Euan A., Nadeau, Kari C., Yang, Samuel, Holmes, Susan, Rabinovitch, Marlene, Rogers, Angela J., Greenleaf, William J., Blish, Catherine A.
Publicado 2021

The mitochondrial multi-omic response to exercise training across tissues

por Amar, David, Gay, Nicole R, Jimenez-Morales, David, Beltran, Pierre M Jean, Ramaker, Megan E, Raja, Archana Natarajan, Zhao, Bingqing, Sun, Yifei, Marwaha, Shruti, Gaul, David, Hershman, Steven G, Xia, Ashley, Lanza, Ian, Fernandez, Facundo M, Montgomery, Stephen B., Hevener, Andrea L., Ashley, Euan A., Walsh, Martin J, Sparks, Lauren M, Burant, Charles F, Rector, R Scott, Thyfault, John, Wheeler, Matthew T., Goodpaster, Bret H., Coen, Paul M., Schenk, Simon, Bodine, Sue C, Lindholm, Maléne E.
Publicado 2023

Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy

por Parikh, Victoria N., Ioannidis, Alexander G., Jimenez-Morales, David, Gorzynski, John E., De Jong, Hannah N., Liu, Xiran, Roque, Jonasel, Cepeda-Espinoza, Victoria P., Osoegawa, Kazutoyo, Hughes, Chris, Sutton, Shirley C., Youlton, Nathan, Joshi, Ruchi, Amar, David, Tanigawa, Yosuke, Russo, Douglas, Wong, Justin, Lauzon, Jessie T., Edelson, Jacob, Mas Montserrat, Daniel, Kwon, Yongchan, Rubinacci, Simone, Delaneau, Olivier, Cappello, Lorenzo, Kim, Jaehee, Shoura, Massa J., Raja, Archana N., Watson, Nathaniel, Hammond, Nathan, Spiteri, Elizabeth, Mallempati, Kalyan C., Montero-Martín, Gonzalo, Christle, Jeffrey, Kim, Jennifer, Kirillova, Anna, Seo, Kinya, Huang, Yong, Zhao, Chunli, Moreno-Grau, Sonia, Hershman, Steven G., Dalton, Karen P., Zhen, Jimmy, Kamm, Jack, Bhatt, Karan D., Isakova, Alina, Morri, Maurizio, Ranganath, Thanmayi, Blish, Catherine A., Rogers, Angela J., Nadeau, Kari, Yang, Samuel, Blomkalns, Andra, O’Hara, Ruth, Neff, Norma F., DeBoever, Christopher, Szalma, Sándor, Wheeler, Matthew T., Gates, Christian M., Farh, Kyle, Schroth, Gary P., Febbo, Phil, deSouza, Francis, Cornejo, Omar E., Fernandez-Vina, Marcelo, Kistler, Amy, Palacios, Julia A., Pinsky, Benjamin A., Bustamante, Carlos D., Rivas, Manuel A., Ashley, Euan A.
Publicado 2022