Whole genome comparison of Aspergillus flavus L-morphotype strain NRRL 3357 (type) and S-morphotype strain AF70

por Gilbert, Matthew K., Mack, Brian M., Moore, Geromy G., Downey, Darlene L., Lebar, Matthew D., Joardar, Vinita, Losada, Liliana, Yu, JiuJiang, Nierman, William C., Bhatnagar, Deepak
Publicado 2018

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

por Joardar, Vinita, Abrams, Natalie F, Hostetler, Jessica, Paukstelis, Paul J, Pakala, Suchitra, Pakala, Suman B, Zafar, Nikhat, Abolude, Olukemi O, Payne, Gary, Andrianopoulos, Alex, Denning, David W, Nierman, William C
Publicado 2012

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence

por Losada, Liliana, Sugui, Janyce A., Eckhaus, Michael A., Chang, Yun C., Mounaud, Stephanie, Figat, Abigail, Joardar, Vinita, Pakala, Suman B., Pakala, Suchitra, Venepally, Pratap, Fedorova, Natalie, Nierman, William C., Kwon-Chung, Kyung J.
Publicado 2015

Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP

por Cubeta, Marc A., Thomas, Elizabeth, Dean, Ralph A., Jabaji, Suha, Neate, Stephen M., Tavantzis, Stellos, Toda, Takeshi, Vilgalys, Rytas, Bharathan, Narayanaswamy, Fedorova-Abrams, Natalie, Pakala, Suman B., Pakala, Suchitra M., Zafar, Nikhat, Joardar, Vinita, Losada, Liliana, Nierman, William C.
Publicado 2014

Mouse genome annotation by the RefSeq project

por McGarvey, Kelly M., Goldfarb, Tamara, Cox, Eric, Farrell, Catherine M., Gupta, Tripti, Joardar, Vinita S., Kodali, Vamsi K., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Webb, David, Wright, Mathew W., Murphy, Terence D., Pruitt, Kim D.
Publicado 2015

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle an...

por Coyne, Robert S, Hannick, Linda, Shanmugam, Dhanasekaran, Hostetler, Jessica B, Brami, Daniel, Joardar, Vinita S, Johnson, Justin, Radune, Diana, Singh, Irtisha, Badger, Jonathan H, Kumar, Ujjwal, Saier, Milton, Wang, Yufeng, Cai, Hong, Gu, Jianying, Mather, Michael W, Vaidya, Akhil B, Wilkes, David E, Rajagopalan, Vidyalakshmi, Asai, David J, Pearson, Chad G, Findly, Robert C, Dickerson, Harry W, Wu, Martin, Martens, Cindy, Van de Peer, Yves, Roos, David S, Cassidy-Hanley, Donna M, Clark, Theodore G
Publicado 2011

Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation

por Pujar, Shashikant, O’Leary, Nuala A, Farrell, Catherine M, Loveland, Jane E, Mudge, Jonathan M, Wallin, Craig, Girón, Carlos G, Diekhans, Mark, Barnes, If, Bennett, Ruth, Berry, Andrew E, Cox, Eric, Davidson, Claire, Goldfarb, Tamara, Gonzalez, Jose M, Hunt, Toby, Jackson, John, Joardar, Vinita, Kay, Mike P, Kodali, Vamsi K, Martin, Fergal J, McAndrews, Monica, McGarvey, Kelly M, Murphy, Michael, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Seal, Ruth L, Suner, Marie-Marthe, Webb, David, Zhu, Sophia, Aken, Bronwen L, Bruford, Elspeth A, Bult, Carol J, Frankish, Adam, Murphy, Terence, Pruitt, Kim D
Publicado 2018

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

por Fedorova, Natalie D., Khaldi, Nora, Joardar, Vinita S., Maiti, Rama, Amedeo, Paolo, Anderson, Michael J., Crabtree, Jonathan, Silva, Joana C., Badger, Jonathan H., Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J., Dyer, Paul S., Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M., Haas, Brian J., Inman, Jason M., Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M., Sundaram, Jaideep P., Sutton, Granger, Turner, Geoff, Venter, J. Craig, White, Owen R., Whitty, Brett R., Youngman, Phil, Wolfe, Kenneth H., Goldman, Gustavo H., Wortman, Jennifer R., Jiang, Bo, Denning, David W., Nierman, William C.
Publicado 2008

A joint NCBI and EMBL-EBI transcript set for clinical genomics and research

por Morales, Joannella, Pujar, Shashikant, Loveland, Jane E., Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M., Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M., Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S., Kay, Michael, Kodali, Vamsi K., McGarvey, Kelly M., McMahon, Aoife, Mudge, Jonathan M., Murphy, Daniel N., Murphy, Michael R., Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R., Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D., Frankish, Adam, Cunningham, Fiona, Murphy, Terence D.
Publicado 2022

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

por O'Leary, Nuala A., Wright, Mathew W., Brister, J. Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M., Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S., Kodali, Vamsi K., Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M., Murphy, Michael R., O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H., Rausch, Daniel, Riddick, Lillian D., Schoch, Conrad, Shkeda, Andrei, Storz, Susan S., Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E., Vatsan, Anjana R., Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J., Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D., Pruitt, Kim D.
Publicado 2016

Improved reference genome of Aedes aegypti informs arbovirus vector control

por Matthews, Benjamin J., Dudchenko, Olga, Kingan, Sarah B., Koren, Sergey, Antoshechkin, Igor, Crawford, Jacob E., Glassford, William J., Herre, Margaret, Redmond, Seth N., Rose, Noah H., Weedall, Gareth D., Wu, Yang, Batra, Sanjit S., Brito-Sierra, Carlos A., Buckingham, Steven D., Campbell, Corey L., Chan, Saki, Cox, Eric, Evans, Benjamin R., Fansiri, Thanyalak, Filipović, Igor, Fontaine, Albin, Gloria-Soria, Andrea, Hall, Richard, Joardar, Vinita S., Jones, Andrew K., Kay, Raissa G. G., Kodali, Vamsi K., Lee, Joyce, Lycett, Gareth J., Mitchell, Sara N., Muehling, Jill, Murphy, Michael R., Omer, Arina D., Partridge, Frederick A., Peluso, Paul, Aiden, Aviva Presser, Ramasamy, Vidya, Rašić, Gordana, Roy, Sourav, Saavedra-Rodriguez, Karla, Sharan, Shruti, Sharma, Atashi, Smith, Melissa Laird, Turner, Joe, Weakley, Allison M., Zhao, Zhilei, Akbari, Omar S., Black, William C., Cao, Han, Darby, Alistair C., Hill, Catherine A., Johnston, J. Spencer, Murphy, Terence D., Raikhel, Alexander S., Sattelle, David B., Sharakhov, Igor V., White, Bradley J., Zhao, Li, Aiden, Erez Lieberman, Mann, Richard S., Lambrechts, Louis, Powell, Jeffrey R., Sharakhova, Maria V., Tu, Zhijian, Robertson, Hugh M., McBride, Carolyn S., Hastie, Alex R., Korlach, Jonas, Neafsey, Daniel E., Phillippy, Adam M., Vosshall, Leslie B.
Publicado 2018

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

por Gulia-Nuss, Monika, Nuss, Andrew B., Meyer, Jason M., Sonenshine, Daniel E., Roe, R. Michael, Waterhouse, Robert M., Sattelle, David B., de la Fuente, José, Ribeiro, Jose M., Megy, Karine, Thimmapuram, Jyothi, Miller, Jason R., Walenz, Brian P., Koren, Sergey, Hostetler, Jessica B., Thiagarajan, Mathangi, Joardar, Vinita S., Hannick, Linda I., Bidwell, Shelby, Hammond, Martin P., Young, Sarah, Zeng, Qiandong, Abrudan, Jenica L., Almeida, Francisca C., Ayllón, Nieves, Bhide, Ketaki, Bissinger, Brooke W., Bonzon-Kulichenko, Elena, Buckingham, Steven D., Caffrey, Daniel R., Caimano, Melissa J., Croset, Vincent, Driscoll, Timothy, Gilbert, Don, Gillespie, Joseph J., Giraldo-Calderón, Gloria I., Grabowski, Jeffrey M., Jiang, David, Khalil, Sayed M. S., Kim, Donghun, Kocan, Katherine M., Koči, Juraj, Kuhn, Richard J., Kurtti, Timothy J., Lees, Kristin, Lang, Emma G., Kennedy, Ryan C., Kwon, Hyeogsun, Perera, Rushika, Qi, Yumin, Radolf, Justin D., Sakamoto, Joyce M., Sánchez-Gracia, Alejandro, Severo, Maiara S., Silverman, Neal, Šimo, Ladislav, Tojo, Marta, Tornador, Cristian, Van Zee, Janice P., Vázquez, Jesús, Vieira, Filipe G., Villar, Margarita, Wespiser, Adam R., Yang, Yunlong, Zhu, Jiwei, Arensburger, Peter, Pietrantonio, Patricia V., Barker, Stephen C., Shao, Renfu, Zdobnov, Evgeny M., Hauser, Frank, Grimmelikhuijzen, Cornelis J. P., Park, Yoonseong, Rozas, Julio, Benton, Richard, Pedra, Joao H. F., Nelson, David R., Unger, Maria F., Tubio, Jose M. C., Tu, Zhijian, Robertson, Hugh M., Shumway, Martin, Sutton, Granger, Wortman, Jennifer R., Lawson, Daniel, Wikel, Stephen K., Nene, Vishvanath M., Fraser, Claire M., Collins, Frank H., Birren, Bruce, Nelson, Karen E., Caler, Elisabet, Hill, Catherine A.
Publicado 2016