SHIFT: speedy histological-to-immunofluorescent translation of a tumor signature enabled by deep learning

por Burlingame, Erik A., McDonnell, Mary, Schau, Geoffrey F., Thibault, Guillaume, Lanciault, Christian, Morgan, Terry, Johnson, Brett E., Corless, Christopher, Gray, Joe W., Chang, Young Hwan
Publicado 2020

Recurrent epimutations activate gene body promoters in primary glioblastoma

por Nagarajan, Raman P., Zhang, Bo, Bell, Robert J.A., Johnson, Brett E., Olshen, Adam B., Sundaram, Vasavi, Li, Daofeng, Graham, Ashley E., Diaz, Aaron, Fouse, Shaun D., Smirnov, Ivan, Song, Jun, Paris, Pamela L., Wang, Ting, Costello, Joseph F.
Publicado 2014

Deconstructing Intratumoral Heterogeneity through Multiomic and Multiscale Analysis of Serial Sections

por Schupp, Patrick G., Shelton, Samuel J., Brody, Daniel J., Eliscu, Rebecca, Johnson, Brett E., Mazor, Tali, Kelley, Kevin W., Potts, Matthew B., McDermott, Michael W., Huang, Eric J., Lim, Daniel A., Pieper, Russell O., Berger, Mitchel S., Costello, Joseph F., Phillips, Joanna J., Oldham, Michael C.
Publicado 2023

Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics

por Li, Allen, Keck, Jamie M., Parmar, Swapnil, Patterson, Janice, Labrie, Marilyne, Creason, Allison L., Johnson, Brett E., Downey, Molly, Thomas, George, Beadling, Carol, Heiser, Laura M., Kolodzie, Annette, Guimaraes, Alexander R., Corless, Christopher L., Gray, Joe W., Mills, Gordon B., Bergan, Raymond C., Mitri, Zahi I.
Publicado 2021

Conserved Role of Intragenic DNA Methylation in Regulating Alternative Promoters

por Maunakea, Alika K., Nagarajan, Raman P., Bilenky, Mikhail, Ballinger, Tracy J., D’Souza, Cletus, Fouse, Shaun D., Johnson, Brett E., Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M., Rowitch, David H., Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J.M., Haussler, David, Marra, Marco A., Hirst, Martin, Wang, Ting, Costello, Joseph F.
Publicado 2010

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications

por Harris, R. Alan, Wang, Ting, Coarfa, Cristian, Nagarajan, Raman P., Hong, Chibo, Downey, Sara L., Johnson, Brett E., Fouse, Shaun D., Delaney, Allen, Zhao, Yongjun, Olshen, Adam, Ballinger, Tracy, Zhou, Xin, Forsberg, Kevin J., Gu, Junchen, Echipare, Lorigail, O’Geen, Henriette, Lister, Ryan, Pelizzola, Mattia, Xi, Yuanxin, Epstein, Charles B., Bernstein, Bradley E., Hawkins, R. David, Ren, Bing, Chung, Wen-Yu, Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Zhang, Michael Q., Haussler, David, Ecker, Joseph, Li, Wei, Farnham, Peggy J., Waterland, Robert A., Meissner, Alexander, Marra, Marco A., Hirst, Martin, Milosavljevic, Aleksandar, Costello, Joseph F.
Publicado 2010

An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer

por Johnson, Brett E., Creason, Allison L., Stommel, Jayne M., Keck, Jamie M., Parmar, Swapnil, Betts, Courtney B., Blucher, Aurora, Boniface, Christopher, Bucher, Elmar, Burlingame, Erik, Camp, Todd, Chin, Koei, Eng, Jennifer, Estabrook, Joseph, Feiler, Heidi S., Heskett, Michael B., Hu, Zhi, Kolodzie, Annette, Kong, Ben L., Labrie, Marilyne, Lee, Jinho, Leyshock, Patrick, Mitri, Souraya, Patterson, Janice, Riesterer, Jessica L., Sivagnanam, Shamilene, Somers, Julia, Sudar, Damir, Thibault, Guillaume, Weeder, Benjamin R., Zheng, Christina, Nan, Xiaolin, Thompson, Reid F., Heiser, Laura M., Spellman, Paul T., Thomas, George, Demir, Emek, Chang, Young Hwan, Coussens, Lisa M., Guimaraes, Alexander R., Corless, Christopher, Goecks, Jeremy, Bergan, Raymond, Mitri, Zahi, Mills, Gordon B., Gray, Joe W.
Publicado 2022