HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

por Abante, Jordi, Ghaffari, Noushin, Johnson, Charles D., Datta, Aniruddha
Publicado 2017

Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress

por Thapa, Ranjita, Tabien, Rodante E., Johnson, Charles D., Septiningsih, Endang M.
Publicado 2023

Modeling the next generation sequencing sample processing pipeline for the purposes of classification

por Ghaffari, Noushin, Yousefi, Mohammadmahdi R, Johnson, Charles D, Ivanov, Ivan, Dougherty, Edward R
Publicado 2013

Insight into redox-regulated gene networks in vascular cells

por Johnson, Charles D, Balagurunathan, Yoganand, Dougherty, Edward R, Afshari, Cynthia A, He, Qiang, Ramos, Kenneth S
Publicado 2007

Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing

por Tian, Bin, Wang, Shichen, Todd, Timothy C., Johnson, Charles D., Tang, Guiliang, Trick, Harold N.
Publicado 2017

Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens

por Wang, Ying, Ghaffari, Noushin, Johnson, Charles D, Braga-Neto, Ulisses M, Wang, Hui, Chen, Rui, Zhou, Huaijun
Publicado 2011

Horn fly transcriptome data of ten populations from the southern United States with varying degrees and molecular mechanisms of pesticide resistance

por Bendele, Kylie G., Guerrero, Felix D., Lohmeyer, Kimberly H., Foil, Lane D., Metz, Richard P., Johnson, Charles D.
Publicado 2023

A Colletotrichum graminicola mutant deficient in the establishment of biotrophy reveals early transcriptional events in the maize anthracnose disease interaction

por Torres, Maria F., Ghaffari, Noushin, Buiate, Ester A. S., Moore, Neil, Schwartz, Scott, Johnson, Charles D., Vaillancourt, Lisa J.
Publicado 2016

Transcriptome Analysis of Developing Grains from Wheat Cultivars TAM 111 and TAM 112 Reveal Cultivar-Specific Regulatory Networks

por Fang, Ze-Tian, Kapoor, Rajan, Datta, Aniruddha, Liu, Shuyu, Stull, Matthew A., Seitz, Paige G., Johnson, Charles D., Okumoto, Sakiko
Publicado 2022

Unraveling gene-gene interactions regulated by ligands of the aryl hydrocarbon receptor.

por Johnson, Charles D, Balagurunathan, Yoganand, Tadesse, Mahlet G, Falahatpisheh, M Hadi, Brun, Marcel, Walker, Mary K, Dougherty, Edward R, Ramos, Kenneth S
Publicado 2004

Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1

por Liang, Yuya, Wang, Shichen, Harper, Chersty L., Subramanian, Nithya K., Tabien, Rodante E., Johnson, Charles D., Bailey-Serres, Julia, Septiningsih, Endang M.
Publicado 2021

Accurate Genomic Predictions for Chronic Wasting Disease in U.S. White-Tailed Deer

por Seabury, Christopher M., Oldeschulte, David L., Bhattarai, Eric K., Legare, Dhruti, Ferro, Pamela J., Metz, Richard P., Johnson, Charles D., Lockwood, Mitchell A., Nichols, Tracy A.
Publicado 2020

RNA-seq analysis reveals different drought tolerance mechanisms in two broadly adapted wheat cultivars ‘TAM 111’ and ‘TAM 112’

por Chu, Chenggen, Wang, Shichen, Paetzold, Li, Wang, Zhen, Hui, Kele, Rudd, Jackie C., Xue, Qingwu, Ibrahim, Amir M. H., Metz, Richard, Johnson, Charles D., Rush, Charles M., Liu, Shuyu
Publicado 2021

Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus

por Guerrero, Felix D., Ghaffari, Noushin, Bendele, Kylie G., Metz, Richard P., Dickens, C. Michael, Blood, Philip D., Tidwell, Jason, Miller, Robert J., de León, Adalberto A. Pérez, Teel, Pete D., Johnson, Charles D.
Publicado 2021

A Draft De Novo Genome Assembly for the Northern Bobwhite (Colinus virginianus) Reveals Evidence for a Rapid Decline in Effective Population Size Beginning in the Late Pleistocene

por Halley, Yvette A., Dowd, Scot E., Decker, Jared E., Seabury, Paul M., Bhattarai, Eric, Johnson, Charles D., Rollins, Dale, Tizard, Ian R., Brightsmith, Donald J., Peterson, Markus J., Taylor, Jeremy F., Seabury, Christopher M.
Publicado 2014

Northern Bobwhite (Colinus virginianus) Mitochondrial Population Genomics Reveals Structure, Divergence, and Evidence for Heteroplasmy

por Halley, Yvette A., Oldeschulte, David L., Bhattarai, Eric K., Hill, Joshua, Metz, Richard P., Johnson, Charles D., Presley, Steven M., Ruzicka, Rebekah E., Rollins, Dale, Peterson, Markus J., Murphy, William J., Seabury, Christopher M.
Publicado 2015

Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112

por Yang, Yan, Dhakal, Smit, Chu, Chenggen, Wang, Shichen, Xue, Qingwu, Rudd, Jackie C., Ibrahim, Amir M. H., Jessup, Kirk, Baker, Jason, Fuentealba, Maria Pilar, Devkota, Ravindra, Baker, Shannon, Johnson, Charles D., Metz, Richard, Liu, Shuyu
Publicado 2020

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity a...

por Oldeschulte, David L., Halley, Yvette A., Wilson, Miranda L., Bhattarai, Eric K., Brashear, Wesley, Hill, Joshua, Metz, Richard P., Johnson, Charles D., Rollins, Dale, Peterson, Markus J., Bickhart, Derek M., Decker, Jared E., Sewell, John F., Seabury, Christopher M.
Publicado 2017

Characterization of triatomine bloodmeal sources using direct Sanger sequencing and amplicon deep sequencing methods

por Balasubramanian, Sujata, Curtis-Robles, Rachel, Chirra, Bhagath, Auckland, Lisa D., Mai, Alan, Bocanegra-Garcia, Virgilio, Clark, Patti, Clark, Wilhelmina, Cottingham, Mark, Fleurie, Geraldine, Johnson, Charles D., Metz, Richard P., Wang, Shichen, Hathaway, Nicholas J., Bailey, Jeffrey A., Hamer, Gabriel L., Hamer, Sarah A.
Publicado 2022

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

por Qiu, Chenxi, Jin, Huiyan, Vvedenskaya, Irina, Llenas, Jordi Abante, Zhao, Tingting, Malik, Indranil, Visbisky, Alex M., Schwartz, Scott L., Cui, Ping, Čabart, Pavel, Han, Kang Hoo, Lai, William K. M., Metz, Richard P., Johnson, Charles D., Sze, Sing-Hoi, Pugh, B. Franklin, Nickels, Bryce E., Kaplan, Craig D.
Publicado 2020