Prevention of data duplication for high throughput sequencing repositories

por Gabdank, Idan, Chan, Esther T, Davidson, Jean M, Hilton, Jason A, Davis, Carrie A, Baymuradov, Ulugbek K, Narayanan, Aditi, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Hitz, Benjamin C, Sloan, Cricket A, Cherry, J Michael
Publicado 2018

The Encyclopedia of DNA elements (ENCODE): data portal update

por Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael
Publicado 2018

New developments on the Encyclopedia of DNA Elements (ENCODE) data portal

por Luo, Yunhai, Hitz, Benjamin C, Gabdank, Idan, Hilton, Jason A, Kagda, Meenakshi S, Lam, Bonita, Myers, Zachary, Sud, Paul, Jou, Jennifer, Lin, Khine, Baymuradov, Ulugbek K, Graham, Keenan, Litton, Casey, Miyasato, Stuart R, Strattan, J Seth, Jolanki, Otto, Lee, Jin-Wook, Tanaka, Forrest Y, Adenekan, Philip, O’Neill, Emma, Cherry, J Michael
Publicado 2020

The ENCODE Portal as an Epigenomics Resource

por Jou, Jennifer, Gabdank, Idan, Luo, Yunhai, Lin, Khine, Sud, Paul, Myers, Zachary, Hilton, Jason A., Kagda, Meenakshi S., Lam, Bonita, O'Neill, Emma, Adenekan, Philip, Graham, Keenan, Baymuradov, Ulugbek K., R. Miyasato, Stuart, Strattan, J. Seth, Jolanki, Otto, Lee, Jin‐Wook, Litton, Casey, Y. Tanaka, Forrest, Hitz, Benjamin C., Cherry, J. Michael
Publicado 2019

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

por Reese, Fairlie, Williams, Brian, Balderrama-Gutierrez, Gabriela, Wyman, Dana, Çelik, Muhammed Hasan, Rebboah, Elisabeth, Rezaie, Narges, Trout, Diane, Razavi-Mohseni, Milad, Jiang, Yunzhe, Borsari, Beatrice, Morabito, Samuel, Liang, Heidi Yahan, McGill, Cassandra J., Rahmanian, Sorena, Sakr, Jasmine, Jiang, Shan, Zeng, Weihua, Carvalho, Klebea, Weimer, Annika K., Dionne, Louise A., McShane, Ariel, Bedi, Karan, Elhajjajy, Shaimae I., Upchurch, Sean, Jou, Jennifer, Youngworth, Ingrid, Gabdank, Idan, Sud, Paul, Jolanki, Otto, Strattan, J. Seth, Kagda, Meenakshi S., Snyder, Michael P., Hitz, Ben C., Moore, Jill E., Weng, Zhiping, Bennett, David, Reinholdt, Laura, Ljungman, Mats, Beer, Michael A., Gerstein, Mark B., Pachter, Lior, Guigó, Roderic, Wold, Barbara J., Mortazavi, Ali
Publicado 2023

The ENCODE Uniform Analysis Pipelines

por Hitz, Benjamin C., Jin-Wook, Lee, Jolanki, Otto, Kagda, Meenakshi S., Graham, Keenan, Sud, Paul, Gabdank, Idan, Strattan, J. Seth, Sloan, Cricket A., Dreszer, Timothy, Rowe, Laurence D., Podduturi, Nikhil R., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Ho, Marcus, Miyasato, Stuart, Simison, Matt, Tanaka, Forrest, Luo, Yunhai, Whaling, Ian, Hong, Eurie L., Lee, Brian T., Sandstrom, Richard, Rynes, Eric, Nelson, Jemma, Nishida, Andrew, Ingersoll, Alyssa, Buckley, Michael, Frerker, Mark, Kim, Daniel S, Boley, Nathan, Trout, Diane, Dobin, Alex, Rahmanian, Sorena, Wyman, Dana, Balderrama-Gutierrez, Gabriela, Reese, Fairlie, Durand, Neva C., Dudchenko, Olga, Weisz, David, Rao, Suhas S. P., Blackburn, Alyssa, Gkountaroulis, Dimos, Sadr, Mahdi, Olshansky, Moshe, Eliaz, Yossi, Nguyen, Dat, Bochkov, Ivan, Shamim, Muhammad Saad, Mahajan, Ragini, Aiden, Erez, Gingeras, Tom, Heath, Simon, Hirst, Martin, Kent, W. James, Kundaje, Anshul, Mortazavi, Ali, Wold, Barbara, Cherry, J. Michael
Publicado 2023

The ENCODE Uniform Analysis Pipelines

por Hitz, Benjamin C., Lee, Jin-Wook, Jolanki, Otto, Kagda, Meenakshi S., Graham, Keenan, Sud, Paul, Gabdank, Idan, Strattan, J. Seth, Sloan, Cricket A., Dreszer, Timothy, Rowe, Laurence D., Podduturi, Nikhil R., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Ho, Marcus, Miyasato, Stuart, Simison, Matt, Tanaka, Forrest, Luo, Yunhai, Whaling, Ian, Hong, Eurie L., Lee, Brian T., Sandstrom, Richard, Rynes, Eric, Nelson, Jemma, Nishida, Andrew, Ingersoll, Alyssa, Buckley, Michael, Frerker, Mark, Kim, Daniel S, Boley, Nathan, Trout, Diane, Dobin, Alex, Rahmanian, Sorena, Wyman, Dana, Balderrama-Gutierrez, Gabriela, Reese, Fairlie, Durand, Neva C., Dudchenko, Olga, Weisz, David, Rao, Suhas S. P., Blackburn, Alyssa, Gkountaroulis, Dimos, Sadr, Mahdi, Olshansky, Moshe, Eliaz, Yossi, Nguyen, Dat, Bochkov, Ivan, Shamim, Muhammad Saad, Mahajan, Ragini, Aiden, Erez, Gingeras, Tom, Heath, Simon, Hirst, Martin, Kent, W. James, Kundaje, Anshul, Mortazavi, Ali, Wold, Barbara, Cherry, J. Michael
Publicado 2023

Narcolepsy risk loci outline role of T cell autoimmunity and infectious triggers in narcolepsy

por Ollila, Hanna M., Sharon, Eilon, Lin, Ling, Sinnott-Armstrong, Nasa, Ambati, Aditya, Yogeshwar, Selina M., Hillary, Ryan P., Jolanki, Otto, Faraco, Juliette, Einen, Mali, Luo, Guo, Zhang, Jing, Han, Fang, Yan, Han, Dong, Xiao Song, Li, Jing, Zhang, Jun, Hong, Seung-Chul, Kim, Tae Won, Dauvilliers, Yves, Barateau, Lucie, Lammers, Gert Jan, Fronczek, Rolf, Mayer, Geert, Santamaria, Joan, Arnulf, Isabelle, Knudsen-Heier, Stine, Bredahl, May Kristin Lyamouri, Thorsby, Per Medbøe, Plazzi, Giuseppe, Pizza, Fabio, Moresco, Monica, Crowe, Catherine, Van den Eeden, Stephen K., Lecendreux, Michel, Bourgin, Patrice, Kanbayashi, Takashi, Martínez-Orozco, Francisco J., Peraita-Adrados, Rosa, Benetó, Antonio, Montplaisir, Jacques, Desautels, Alex, Huang, Yu-Shu, Jennum, Poul, Nevsimalova, Sona, Kemlink, David, Iranzo, Alex, Overeem, Sebastiaan, Wierzbicka, Aleksandra, Geisler, Peter, Sonka, Karel, Honda, Makoto, Högl, Birgit, Stefani, Ambra, Coelho, Fernando Morgadinho, Mantovani, Vilma, Feketeova, Eva, Wadelius, Mia, Eriksson, Niclas, Smedje, Hans, Hallberg, Pär, Hesla, Per Egil, Rye, David, Pelin, Zerrin, Ferini-Strambi, Luigi, Bassetti, Claudio L., Mathis, Johannes, Khatami, Ramin, Aran, Adi, Nampoothiri, Sheela, Olsson, Tomas, Kockum, Ingrid, Partinen, Markku, Perola, Markus, Kornum, Birgitte R., Rueger, Sina, Winkelmann, Juliane, Miyagawa, Taku, Toyoda, Hiromi, Khor, Seik-Soon, Shimada, Mihoko, Tokunaga, Katsushi, Rivas, Manuel, Pritchard, Jonathan K., Risch, Neil, Kutalik, Zoltan, O’Hara, Ruth, Hallmayer, Joachim, Ye, Chun Jimmie, Mignot, Emmanuel J.
Publicado 2023