Cryo-EM Map–Based Model Validation Using the False Discovery Rate Approach

por Olek, Mateusz, Joseph, Agnel Praveen
Publicado 2021

Assessment of protein–protein interfaces in cryo-EM derived assemblies

por Malhotra, Sony, Joseph, Agnel Praveen, Thiyagalingam, Jeyan, Topf, Maya
Publicado 2021

3PFDB+: improved search protocol and update for the identification of representatives of protein sequence domain families

por Joseph, Agnel P., Shingate, Prashant, Upadhyay, Atul K., Sowdhamini, R.
Publicado 2014

Overview and applications of map and model validation tools in the CCP-EM software suite

por Joseph, Agnel Praveen, Malhotra, Sony, Burnley, Tom, Winn, Martyn D.
Publicado 2022

Analysis of protein chameleon sequence characteristics

por Ghozlane, Amine, Joseph, Agnel Praveen, Bornot, Aurelie, de Brevern, Alexandre G
Publicado 2009

Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes

por Joseph, Agnel Praveen, Valadié, Hélène, Srinivasan, Narayanaswamy, de Brevern, Alexandre G.
Publicado 2012

Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy

por Joseph, Agnel Praveen, Lagerstedt, Ingvar, Patwardhan, Ardan, Topf, Maya, Winn, Martyn
Publicado 2017

Editorial: Advances in Molecular Docking and Structure-Based Modelling

por Rebehmed, Joseph, de Brevern, Alexandre G., Sowdhamini, Ramanathan, Joseph, Agnel Praveen
Publicado 2022

Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

por Mansiaux, Yohann, Joseph, Agnel Praveen, Gelly, Jean-Christophe, de Brevern, Alexandre G.
Publicado 2011

iPBA: a tool for protein structure comparison using sequence alignment strategies

por Gelly, Jean-Christophe, Joseph, Agnel Praveen, Srinivasan, Narayanaswamy, de Brevern, Alexandre G.
Publicado 2011

The beta hairpin structure within ribosomal protein S5 mediates interplay between domains II and IV and regulates HCV IRES function

por Bhat, Prasanna, Shwetha, Shivaprasad, Sharma, Divya Khandige, Joseph, Agnel Praveen, Srinivasan, Narayanaswamy, Das, Saumitra
Publicado 2015

TEMPy: a Python library for assessment of three-dimensional electron microscopy density fits

por Farabella, Irene, Vasishtan, Daven, Joseph, Agnel Praveen, Pandurangan, Arun Prasad, Sahota, Harpal, Topf, Maya
Publicado 2015

Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps

por Joseph, Agnel Praveen, Lagerstedt, Ingvar, Jakobi, Arjen, Burnley, Tom, Patwardhan, Ardan, Topf, Maya, Winn, Martyn
Publicado 2020

TEMPy2: a Python library with improved 3D electron microscopy density-fitting and validation workflows

por Cragnolini, Tristan, Sahota, Harpal, Joseph, Agnel Praveen, Sweeney, Aaron, Malhotra, Sony, Vasishtan, Daven, Topf, Maya
Publicado 2021

RIBFIND2: Identifying rigid bodies in protein and nucleic acid structures

por Malhotra, Sony, Mulvaney, Thomas, Cragnolini, Tristan, Sidhu, Haneesh, Joseph, Agnel P, Beton, Joseph G, Topf, Maya
Publicado 2023

Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment

por Joseph, Agnel Praveen, Malhotra, Sony, Burnley, Tom, Wood, Chris, Clare, Daniel K., Winn, Martyn, Topf, Maya
Publicado 2016

Atomic model validation using the CCP-EM software suite

por Joseph, Agnel Praveen, Olek, Mateusz, Malhotra, Sony, Zhang, Peijun, Cowtan, Kevin, Burnley, Tom, Winn, Martyn D.
Publicado 2022

PBxplore: a tool to analyze local protein structure and deformability with Protein Blocks

por Barnoud, Jonathan, Santuz, Hubert, Craveur, Pierrick, Joseph, Agnel Praveen, Jallu, Vincent, de Brevern, Alexandre G., Poulain, Pierre
Publicado 2017

HIV reverse transcriptase: Structural interpretation of drug resistant genetic variants from India

por Kandathil, Abraham Joseph, Joseph, Agnel Praveen, Kannangai, Rajesh, Srinivasan, Narayanaswamy, Abraham, Oriapadickal Cherian, Pulimood, Susanne Alexander, Sridharan, Gopalan
Publicado 2009

Structural basis of human kinesin-8 function and inhibition

por Locke, Julia, Joseph, Agnel Praveen, Peña, Alejandro, Möckel, Martin M., Mayer, Thomas U., Topf, Maya, Moores, Carolyn A.
Publicado 2017