Identification and functional characterization of cis-regulatory elements in the apicomplexan parasite Toxoplasma gondii

por Mullapudi, Nandita, Joseph, Sandeep J, Kissinger, Jessica C
Publicado 2009

Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile

por Oberstaller, Jenna, Joseph, Sandeep J, Kissinger, Jessica C
Publicado 2013

Comparison of Two Output-Coding Strategies for Multi-Class Tumor Classification Using Gene Expression Data and Latent Variable Model as Binary Classifier

por Joseph, Sandeep J., Robbins, Kelly R., Zhang, Wensheng, Rekaya, Romdhane
Publicado 2010

Interplay of recombination and selection in the genomes of Chlamydia trachomatis

por Joseph, Sandeep J, Didelot, Xavier, Gandhi, Khanjan, Dean, Deborah, Read, Timothy D
Publicado 2011

Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen

por Joseph, Sandeep J., Marti, Hanna, Didelot, Xavier, Read, Timothy D., Dean, Deborah
Publicado 2016

Omega-6 Fat Supplementation Alters Lipogenic Gene Expression in Bovine Subcutaneous Adipose Tissue

por Joseph, Sandeep J., Pratt, Scott L., Pavan, Enrique, Rekaya, Romdhane, Duckett., Susan K.
Publicado 2010

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

por Joseph, Sandeep J., Bommana, Sankhya, Ziklo, Noa, Kama, Mike, Dean, Deborah, Read, Timothy D.
Publicado 2023

Comparative Analysis of Chlamydia psittaci Genomes Reveals the Recent Emergence of a Pathogenic Lineage with a Broad Host Range

por Read, Timothy D., Joseph, Sandeep J., Didelot, Xavier, Liang, Brooke, Patel, Lisa, Dean, Deborah
Publicado 2013

Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae

por Marti, Hanna, Kim, Hoyon, Joseph, Sandeep J., Dojiri, Stacey, Read, Timothy D., Dean, Deborah
Publicado 2017

Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis

por Joseph, Sandeep J., Bommana, Sankhya, Ziklo, Noa, Kama, Mike, Dean, Deborah, Read, Timothy D.
Publicado 2023

Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans

por Joseph, Sandeep J., Marti, Hanna, Didelot, Xavier, Castillo-Ramirez, Santiago, Read, Timothy D., Dean, Deborah
Publicado 2015

Genetic Similarity of Gonococcal Homologs to Meningococcal Outer Membrane Proteins of Serogroup B Vaccine

por Marjuki, Henju, Topaz, Nadav, Joseph, Sandeep J., Gernert, Kim M., Kersh, Ellen N., Wang, Xin
Publicado 2019

Effect of Diet Supplementation on the Expression of Bovine Genes Associated with Fatty Acid Synthesis and Metabolism

por Joseph, Sandeep J., Robbins, Kelly R., Pavan, Enrique, Pratt, Scott L., Duckett, Susan K., Rekaya, Romdhane
Publicado 2010

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

por Joseph, Sandeep J., Li, Ben, Petit III, Robert A., Qin, Zhaohui S., Darrow, Lyndsey, Read, Timothy D.
Publicado 2016

Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data

por Petit III, Robert A., Hogan, James M., Ezewudo, Matthew N., Joseph, Sandeep J., Read, Timothy D.
Publicado 2018

Comparative Genomic and Transcriptomic Analysis of Naegleria fowleri Clinical and Environmental Isolates

por Joseph, Sandeep J., Park, Subin, Kelley, Alyssa, Roy, Shantanu, Cope, Jennifer R., Ali, Ibne Karim M.
Publicado 2021

Direct Amplification, Sequencing and Profiling of Chlamydia trachomatis Strains in Single and Mixed Infection Clinical Samples

por Joseph, Sandeep J., Li, Ben, Ghonasgi, Tanvi, Haase, Chad P., Qin, Zhaohui S., Dean, Deborah, Read, Timothy D.
Publicado 2014

Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs

por Bowden, Katherine E., Joseph, Sandeep J., Cartee, John C., Ziklo, Noa, Danavall, Damien, Raphael, Brian H., Read, Timothy D., Dean, Deborah
Publicado 2021

Hypervirulent Chlamydia trachomatis Clinical Strain Is a Recombinant between Lymphogranuloma Venereum (L(2)) and D Lineages

por Somboonna, Naraporn, Wan, Raymond, Ojcius, David M., Pettengill, Matthew A., Joseph, Sandeep J., Chang, Alexander, Hsu, Ray, Read, Timothy D., Dean, Deborah
Publicado 2011

A Multiplexed Microfluidic PCR Assay for Sensitive and Specific Point-of-Care Detection of Chlamydia trachomatis

por Dean, Deborah, Turingan, Rosemary S., Thomann, Hans-Ulrich, Zolotova, Anna, Rothschild, James, Joseph, Sandeep J., Read, Timothy D., Tan, Eugene, Selden, Richard F.
Publicado 2012