Intuitive Visualization and Analysis of Multi-Omics Data and Application to Escherichia coli Carbon Metabolism

por Enjalbert, Brice, Jourdan, Fabien, Portais, Jean-Charles
Publicado 2011

Flux Analysis of the Trypanosoma brucei Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach

por Ghozlane, Amine, Bringaud, Frédéric, Soueidan, Hayssam, Dutour, Isabelle, Jourdan, Fabien, Thébault, Patricia
Publicado 2012

DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks

por Rodríguez-Mier, Pablo, Poupin, Nathalie, de Blasio, Carlo, Le Cam, Laurent, Jourdan, Fabien
Publicado 2021

Metabolic network visualization eliminating node redundance and preserving metabolic pathways

por Bourqui, Romain, Cottret, Ludovic, Lacroix, Vincent, Auber, David, Mary, Patrick, Sagot, Marie-France, Jourdan, Fabien
Publicado 2007

MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks

por Cottret, Ludovic, Wildridge, David, Vinson, Florence, Barrett, Michael P., Charles, Hubert, Sagot, Marie-France, Jourdan, Fabien
Publicado 2010

MetExploreViz: web component for interactive metabolic network visualization

por Chazalviel, Maxime, Frainay, Clément, Poupin, Nathalie, Vinson, Florence, Merlet, Benjamin, Gloaguen, Yoann, Cottret, Ludovic, Jourdan, Fabien
Publicado 2018

Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas

por Frainay, Clément, Schymanski, Emma L., Neumann, Steffen, Merlet, Benjamin, Salek, Reza M., Jourdan, Fabien, Yanes, Oscar
Publicado 2018

Gaining Insights Into Metabolic Networks Using Chemometrics and Bioinformatics: Chronic Kidney Disease as a Clinical Model

por Boccard, Julien, Schvartz, Domitille, Codesido, Santiago, Hanafi, Mohamed, Gagnebin, Yoric, Ponte, Belén, Jourdan, Fabien, Rudaz, Serge
Publicado 2021

A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks

por Merlet, Benjamin, Paulhe, Nils, Vinson, Florence, Frainay, Clément, Chazalviel, Maxime, Poupin, Nathalie, Gloaguen, Yoann, Giacomoni, Franck, Jourdan, Fabien
Publicado 2016

Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors

por Delmas, Maxime, Filangi, Olivier, Duperier, Christophe, Paulhe, Nils, Vinson, Florence, Rodriguez-Mier, Pablo, Giacomoni, Franck, Jourdan, Fabien, Frainay, Clément
Publicado 2023

An Untargeted Metabolomics Approach to Investigate the Metabolic Modulations of HepG2 Cells Exposed to Low Doses of Bisphenol A and 17β-Estradiol

por Cabaton, Nicolas J., Poupin, Nathalie, Canlet, Cécile, Tremblay-Franco, Marie, Audebert, Marc, Cravedi, Jean-Pierre, Riu, Anne, Jourdan, Fabien, Zalko, Daniel
Publicado 2018

Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining

por Jourdan, Fabien, Cottret, Ludovic, Huc, Laurence, Wildridge, David, Scheltema, Richard, Hillenweck, Anne, Barrett, Michael P., Zalko, Daniel, Watson, David G., Debrauwer, Laurent
Publicado 2010

Integrated transcriptomics and metabolomics reveal signatures of lipid metabolism dysregulation in HepaRG liver cells exposed to PCB 126

por Mesnage, Robin, Biserni, Martina, Balu, Sucharitha, Frainay, Clément, Poupin, Nathalie, Jourdan, Fabien, Wozniak, Eva, Xenakis, Theodoros, Mein, Charles A., Antoniou, Michael N.
Publicado 2018

MetaboRank: network-based recommendation system to interpret and enrich metabolomics results

por Frainay, Clément, Aros, Sandrine, Chazalviel, Maxime, Garcia, Thomas, Vinson, Florence, Weiss, Nicolas, Colsch, Benoit, Sedel, Frédéric, Thabut, Dominique, Junot, Christophe, Jourdan, Fabien
Publicado 2019

Postprandial NMR-Based Metabolic Exchanges Reflect Impaired Phenotypic Flexibility across Splanchnic Organs in the Obese Yucatan Mini-Pig

por Tremblay-Franco, Marie, Poupin, Nathalie, Amiel, Aurélien, Canlet, Cécile, Rémond, Didier, Debrauwer, Laurent, Dardevet, Dominique, Jourdan, Fabien, Savary-Auzeloux, Isabelle, Polakof, Sergio
Publicado 2020

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics

por Silva, Ricardo R., Jourdan, Fabien, Salvanha, Diego M., Letisse, Fabien, Jamin, Emilien L., Guidetti-Gonzalez, Simone, Labate, Carlos A., Vêncio, Ricardo Z. N.
Publicado 2014

Inhibition of enteric methanogenesis in dairy cows induces changes in plasma metabolome highlighting metabolic shifts and potential markers of emission

por Yanibada, Bénédict, Hohenester, Ulli, Pétéra, Mélanie, Canlet, Cécile, Durand, Stéphanie, Jourdan, Fabien, Boccard, Julien, Martin, Cécile, Eugène, Maguy, Morgavi, Diego P., Boudra, Hamid
Publicado 2020

Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis

por Wieder, Cecilia, Frainay, Clément, Poupin, Nathalie, Rodríguez-Mier, Pablo, Vinson, Florence, Cooke, Juliette, Lai, Rachel PJ, Bundy, Jacob G., Jourdan, Fabien, Ebbels, Timothy
Publicado 2021

FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

por Delmas, Maxime, Filangi, Olivier, Paulhe, Nils, Vinson, Florence, Duperier, Christophe, Garrier, William, Saunier, Paul-Emeric, Pitarch, Yoann, Jourdan, Fabien, Giacomoni, Franck, Frainay, Clément
Publicado 2021

Dynamic Metabolic Disruption in Rats Perinatally Exposed to Low Doses of Bisphenol-A

por Tremblay-Franco, Marie, Cabaton, Nicolas J., Canlet, Cécile, Gautier, Roselyne, Schaeberle, Cheryl M., Jourdan, Fabien, Sonnenschein, Carlos, Vinson, Florence, Soto, Ana M., Zalko, Daniel
Publicado 2015