Evolution of the Mitochondrial Genomes of Gall Midges (Diptera: Cecidomyiidae): Rearrangement and Severe Truncation of tRNA Genes

por Beckenbach, Andrew T., Joy, Jeffrey B.
Publicado 2009

Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates With Bayesian Inference

por Jones, Bradley R, Joy, Jeffrey B
Publicado 2023

Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir

por Jones, Bradley R, Joy, Jeffrey B
Publicado 2020

Genomic Environment Impacts Color Vision Evolution in a Family with Visually Based Sexual Selection

por Sandkam, Benjamin A, Joy, Jeffrey B, Watson, Corey T, Breden, Felix
Publicado 2017

Comparative Analysis of Within-Host Mutation Patterns and Diversity of Hepatitis C Virus Subtypes 1a, 1b, and 3a

por Tisthammer, Kaho H., Dong, Weiyan, Joy, Jeffrey B., Pennings, Pleuni S.
Publicado 2021

Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation?

por Hipfner, J Mark, Gorman, Kristen B, Vos, Rutger A, Joy, Jeffrey B
Publicado 2010

The global origins of resistance-associated variants in the non-structural proteins 5A and 5B of the hepatitis C virus

por Jones, Bradley R, Howe, Anita Y M, Harrigan, P Richard, Joy, Jeffrey B
Publicado 2018

Variable routes to genomic and host adaptation among coronaviruses

por Montoya, Vincent, McLaughlin, Angela, Mordecai, Gideon J., Miller, Rachel L., Joy, Jeffrey B.
Publicado 2021

Fundamental Identifiability Limits in Molecular Epidemiology

por Louca, Stilianos, McLaughlin, Angela, MacPherson, Ailene, Joy, Jeffrey B, Pennell, Matthew W
Publicado 2021

Unifying Phylogenetic Birth–Death Models in Epidemiology and Macroevolution

por MacPherson, Ailene, Louca, Stilianos, McLaughlin, Angela, Joy, Jeffrey B, Pennell, Matthew W
Publicado 2021

Ancestral Reconstruction

por Joy, Jeffrey B., Liang, Richard H., McCloskey, Rosemary M., Nguyen, T., Poon, Art F. Y.
Publicado 2016

Phylogenetic surveillance of travel-related Zika virus infections through whole-genome sequencing methods

por Kamelian, Kimia, Montoya, Vincent, Olmstead, Andrea, Dong, Winnie, Harrigan, Richard, Morshed, Muhammad, Joy, Jeffrey B.
Publicado 2019

Assessing in vivo mutation frequencies and creating a high-resolution genome-wide map of fitness costs of Hepatitis C virus

por Tisthammer, Kaho H., Solis, Caroline, Orcales, Faye, Nzerem, Madu, Winstead, Ryan, Dong, Weiyan, Joy, Jeffrey B., Pennings, Pleuni S.
Publicado 2022

Concordance of HIV transmission risk factors elucidated using viral diversification rate and phylogenetic clustering

por McLaughlin, Angela, Sereda, Paul, Brumme, Chanson J, Brumme, Zabrina L, Barrios, Rolando, Montaner, Julio S G, Joy, Jeffrey B
Publicado 2021

Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada

por McLaughlin, Angela, Montoya, Vincent, Miller, Rachel L, Mordecai, Gideon J, Worobey, Michael, Poon, Art FY, Joy, Jeffrey B
Publicado 2022

Detection of HIV transmission hotspots in British Columbia, Canada: A novel framework for the prioritization and allocation of treatment and prevention resources

por McLaughlin, Angela, Sereda, Paul, Oliveira, Natalia, Barrios, Rolando, Brumme, Chanson J., Brumme, Zabrina L., Montaner, Julio S.G., Joy, Jeffrey B.
Publicado 2019

Proviral Turnover During Untreated HIV Infection Is Dynamic and Variable Between Hosts, Impacting Reservoir Composition on ART

por Brooks, Kelsie, Omondi, F. Harrison, Liang, Richard H., Sudderuddin, Hanwei, Jones, Bradley R., Joy, Jeffrey B., Brumme, Chanson J., Hunter, Eric, Brumme, Zabrina L.
Publicado 2021

The emergence of SARS-CoV-2 in Europe and the US

por Worobey, Michael, Pekar, Jonathan, Larsen, Brendan B., Nelson, Martha I., Hill, Verity, Joy, Jeffrey B., Rambaut, Andrew, Suchard, Marc A., Wertheim, Joel O., Lemey, Philippe
Publicado 2020

The emergence of SARS-CoV-2 in Europe and North America

por Worobey, Michael, Pekar, Jonathan, Larsen, Brendan B., Nelson, Martha I., Hill, Verity, Joy, Jeffrey B., Rambaut, Andrew, Suchard, Marc A., Wertheim, Joel O., Lemey, Philippe
Publicado 2020

Intra-host evolutionary dynamics of the hepatitis C virus among people who inject drugs

por Montoya, Vincent, Howe, Anita Y. M., Dong, Weiyan Y., Dong, Winnie, Brumme, Chanson J., Olmstead, Andrea D., Hayashi, Kanna, Richard Harrigan, P., Joy, Jeffrey B.
Publicado 2021