An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data

por Mah, Clarence K., Wenzel, Alexander T., Juarez, Edwin F., Tabor, Thorin, Reich, Michael M., Mesirov, Jill P.
Publicado 2019

Quantifying differences in cell line population dynamics using CellPD

por Juarez, Edwin F., Lau, Roy, Friedman, Samuel H., Ghaffarizadeh, Ahmadreza, Jonckheere, Edmond, Agus, David B., Mumenthaler, Shannon M., Macklin, Paul
Publicado 2016

High-throughput microscopy reveals the impact of multifactorial environmental perturbations on colorectal cancer cell growth

por Chiang, Chun-Te, Lau, Roy, Ghaffarizadeh, Ahmadreza, Brovold, Matthew, Vyas, Dipen, Juárez, Edwin F, Atala, Anthony, Agus, David B, Soker, Shay, Macklin, Paul, Ruderman, Daniel, Mumenthaler, Shannon M
Publicado 2021

A FZD7-specific Antibody–Drug Conjugate Induces Ovarian Tumor Regression in Preclinical Models

por Do, Myan, Wu, Christina C.N., Sonavane, Pooja R., Juarez, Edwin F., Adams, Stephen R., Ross, Jason, Rodriguez y Baena, Alessandra, Patel, Charmi, Mesirov, Jill P., Carson, Dennis A., Advani, Sunil J., Willert, Karl
Publicado 2022

Model-based assessment of mammalian cell metabolic functionalities using omics data

por Richelle, Anne, Kellman, Benjamin P., Wenzel, Alexander T., Chiang, Austin W.T., Reagan, Tyler, Gutierrez, Jahir M., Joshi, Chintan, Li, Shangzhong, Liu, Joanne K., Masson, Helen, Lee, Jooyong, Li, Zerong, Heirendt, Laurent, Trefois, Christophe, Juarez, Edwin F., Bath, Tyler, Borland, David, Mesirov, Jill P., Robasky, Kimberly, Lewis, Nathan E.
Publicado 2021

Inhibition of dual-specificity tyrosine phosphorylation-regulated kinase 2 perturbs 26S proteasome-addicted neoplastic progression

por Banerjee, Sourav, Wei, Tiantian, Wang, Jue, Lee, Jenna J., Gutierrez, Haydee L., Chapman, Owen, Wiley, Sandra E., Mayfield, Joshua E., Tandon, Vasudha, Juarez, Edwin F., Chavez, Lukas, Liang, Ruqi, Sah, Robert L., Costello, Caitlin, Mesirov, Jill P., de la Vega, Laureano, Cooper, Kimberly L., Dixon, Jack E., Xiao, Junyu, Lei, Xiaoguang
Publicado 2019

EPEN-04. ONCOGENIC 3D TUMOR GENOME ORGANIZATION IDENTIFIES NEW THERAPEUTIC TARGETS IN EPENDYMOMA

por Okonechnikov, Konstantin, Hübner, Jens-Martin, Chapman, Owen, Chakraborty, Abhijit, Pagadala, Meghana, Bump, Rosalind, Chandran, Sahaana, Kraft, Katerina, Hidalgo, Rocio Acuna, Mundlos, Stefan, Wechsler-Reya, Robert, Juarez, Edwin F, Coufal, Nicole, Levy, Michael, Crawford, John, Pajtler, Kristian, Reid, Derek, Schmitt, Anthony, Carter, Hannah, Ay, Ferhat, Dixon, Jesse, Mesirov, Jill, Pfister, Stefan M, Kool, Marcel, Chavez, Lukas
Publicado 2020

EPEN-18. Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma

por Okonechnikov, Konstantin, Camgöz, Aylin, Park, Donglim Esther, Chapman, Owen, Hübner, Jens-Martin, Jenseit, Anne, Chakraborty, Abhijit, Pagadala, Meghana, Bump, Rosalind, Chandran, Sahaana, Kraft, Katherina, Hidalgo, Rocio Acuna, Reid, Derek, Juarez, Edwin F, Robinson, James T, Pajtler, Kristian W, Milde, Till, Coufal, Nicole, Levy, Michael, Malicki, Denise, Nahas, Shareef, Snuderl, Matija, Crawford, John, Wechsler-Reya, Robert, Mundlos, Stefan, Schmitt, Anthony, Carter, Hannah, Michealraj, Kulandaimanuvel Antony, Kumar, Sachin A, Taylor, Michael D, Rich, Jeremy, Mesirov, Jill, Pfister, Stefan P, Ay, Ferhat, Dixon, Jesse, Kool, Marcel, Chavez, Lukas
Publicado 2022

3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma

por Okonechnikov, Konstantin, Camgöz, Aylin, Chapman, Owen, Wani, Sameena, Park, Donglim Esther, Hübner, Jens-Martin, Chakraborty, Abhijit, Pagadala, Meghana, Bump, Rosalind, Chandran, Sahaana, Kraft, Katerina, Acuna-Hidalgo, Rocio, Reid, Derek, Sikkink, Kristin, Mauermann, Monika, Juarez, Edwin F., Jenseit, Anne, Robinson, James T., Pajtler, Kristian W., Milde, Till, Jäger, Natalie, Fiesel, Petra, Morgan, Ling, Sridhar, Sunita, Coufal, Nicole G., Levy, Michael, Malicki, Denise, Hobbs, Charlotte, Kingsmore, Stephen, Nahas, Shareef, Snuderl, Matija, Crawford, John, Wechsler-Reya, Robert J., Davidson, Tom Belle, Cotter, Jennifer, Michaiel, George, Fleischhack, Gudrun, Mundlos, Stefan, Schmitt, Anthony, Carter, Hannah, Michealraj, Kulandaimanuvel Antony, Kumar, Sachin A., Taylor, Michael D., Rich, Jeremy, Buchholz, Frank, Mesirov, Jill P., Pfister, Stefan M., Ay, Ferhat, Dixon, Jesse R., Kool, Marcel, Chavez, Lukas
Publicado 2023