upSET, the Drosophila homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks

por McElroy, Kyle A., Jung, Youngsook L., Zee, Barry M., Wang, Charlotte I., Park, Peter J., Kuroda, Mitzi I.
Publicado 2017

Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila

por Kang, Hyuckjoon, Jung, Youngsook L., McElroy, Kyle A., Zee, Barry M., Wallace, Heather A., Woolnough, Jessica L., Park, Peter J., Kuroda, Mitzi I.
Publicado 2017

Epigenetic transcriptional reprogramming by WT1 mediates a repair response during podocyte injury

por Ettou, Sandrine, Jung, Youngsook L., Miyoshi, Tomoya, Jain, Dhawal, Hiratsuka, Ken, Schumacher, Valerie, Taglienti, Mary E., Morizane, Ryuji, Park, Peter J., Kreidberg, Jordan A.
Publicado 2020

Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

por Cortés-Ciriano, Isidro, Lee, Jake June-Koo, Xi, Ruibin, Jain, Dhawal, Jung, Youngsook L., Yang, Lixing, Gordenin, Dmitry, Klimczak, Leszek J., Zhang, Cheng-Zhong, Pellman, David S., Park, Peter J.
Publicado 2023

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

por Cortés-Ciriano, Isidro, Lee, Jake June-Koo, Xi, Ruibin, Jain, Dhawal, Jung, Youngsook L., Yang, Lixing, Gordenin, Dmitry, Klimczak, Leszek J., Zhang, Cheng-Zhong, Pellman, David S., Park, Peter J.
Publicado 2020

Impact of sequencing depth in ChIP-seq experiments

por Jung, Youngsook L., Luquette, Lovelace J., Ho, Joshua W.K., Ferrari, Francesco, Tolstorukov, Michael, Minoda, Aki, Issner, Robbyn, Epstein, Charles B., Karpen, Gary H., Kuroda, Mitzi I., Park, Peter J.
Publicado 2014

Enrichment of HP1a on Drosophila Chromosome 4 Genes Creates an Alternate Chromatin Structure Critical for Regulation in this Heterochromatic Domain

por Riddle, Nicole C., Jung, Youngsook L., Gu, Tingting, Alekseyenko, Artyom A., Asker, Dalal, Gui, Hongxing, Kharchenko, Peter V., Minoda, Aki, Plachetka, Annette, Schwartz, Yuri B., Tolstorukov, Michael Y., Kuroda, Mitzi I., Pirrotta, Vincenzo, Karpen, Gary H., Park, Peter J., Elgin, Sarah C. R.
Publicado 2012

Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

por Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Publicado 2012

Correction: Sequence-Specific Targeting of Dosage Compensation in Drosophila Favors an Active Chromatin Context

por Alekseyenko, Artyom A., Ho, Joshua W. K., Peng, Shouyong, Gelbart, Marnie, Tolstorukov, Michael Y., Plachetka, Annette, Kharchenko, Peter V., Jung, Youngsook L., Gorchakov, Andrey A., Larschan, Erica, Gu, Tingting, Minoda, Aki, Riddle, Nicole C., Schwartz, Yuri B., Elgin, Sarah C. R., Karpen, Gary H., Pirrotta, Vincenzo, Kuroda, Mitzi I., Park, Peter J.
Publicado 2014

Nature and function of insulator protein binding sites in the Drosophila genome

por Schwartz, Yuri B., Linder-Basso, Daniela, Kharchenko, Peter V., Tolstorukov, Michael Y., Kim, Maria, Li, Hua-Bing, Gorchakov, Andrey A., Minoda, Aki, Shanower, Gregory, Alekseyenko, Artyom A., Riddle, Nicole C., Jung, Youngsook L., Gu, Tingting, Plachetka, Annette, Elgin, Sarah C.R., Kuroda, Mitzi I., Park, Peter J., Savitsky, Mikhail, Karpen, Gary H., Pirrotta, Vincenzo
Publicado 2012

Comprehensive analysis of the chromatin landscape in Drosophila

por Kharchenko, Peter V., Alekseyenko, Artyom A., Schwartz, Yuri B., Minoda, Aki, Riddle, Nicole C., Ernst, Jason, Sabo, Peter J., Larschan, Erica, Gorchakov, Andrey A., Gu, Tingting, Linder-Basso, Daniela, Plachetka, Annette, Shanower, Gregory, Tolstorukov, Michael Y., Luquette, Lovelace J., Xi, Ruibin, Jung, Youngsook L., Park, Richard W., Bishop, Eric P., Canfield, Theresa P., Sandstrom, Richard, Thurman, Robert E., MacAlpine, David M., Stamatoyannopoulos, John A., Kellis, Manolis, Elgin, Sarah C. R., Kuroda, Mitzi I., Pirrotta, Vincenzo, Karpen, Gary H., Park, Peter J.
Publicado 2010

The histone chaperone CAF-1 safeguards somatic cell identity

por Cheloufi, Sihem, Elling, Ulrich, Hopfgartner, Barbara, Jung, Youngsook L, Murn, Jernej, Ninova, Maria, Hubmann, Maria, Badeaux, Aimee I, Ang, Cheen Euong, Tenen, Danielle, Wesche, Daniel J, Abazova, Nadezhda, Hogue, Max, Tasdemir, Nilgun, Brumbaugh, Justin, Rathert, Philipp, Jude, Julian, Ferrari, Francesco, Blanco, Andres, Fellner, Michaela, Wenzel, Daniel, Zinner, Marietta, Vidal, Simon E, Bell, Oliver, Stadtfeld, Matthias, Chang, Howard Y., Almouzni, Genevieve, Lowe, Scott W, Rinn, John, Wernig, Marius, Aravin, Alexei, Shi, Yang, Park, Peter, Penninger, Josef M, Zuber, Johannes, Hochedlinger, Konrad
Publicado 2015

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

por Landt, Stephen G., Marinov, Georgi K., Kundaje, Anshul, Kheradpour, Pouya, Pauli, Florencia, Batzoglou, Serafim, Bernstein, Bradley E., Bickel, Peter, Brown, James B., Cayting, Philip, Chen, Yiwen, DeSalvo, Gilberto, Epstein, Charles, Fisher-Aylor, Katherine I., Euskirchen, Ghia, Gerstein, Mark, Gertz, Jason, Hartemink, Alexander J., Hoffman, Michael M., Iyer, Vishwanath R., Jung, Youngsook L., Karmakar, Subhradip, Kellis, Manolis, Kharchenko, Peter V., Li, Qunhua, Liu, Tao, Liu, X. Shirley, Ma, Lijia, Milosavljevic, Aleksandar, Myers, Richard M., Park, Peter J., Pazin, Michael J., Perry, Marc D., Raha, Debasish, Reddy, Timothy E., Rozowsky, Joel, Shoresh, Noam, Sidow, Arend, Slattery, Matthew, Stamatoyannopoulos, John A., Tolstorukov, Michael Y., White, Kevin P., Xi, Simon, Farnham, Peggy J., Lieb, Jason D., Wold, Barbara J., Snyder, Michael
Publicado 2012