Improving consensus structure by eliminating averaging artifacts

por KC, Dukka B
Publicado 2009

Einstein–Roscoe regression for the slag viscosity prediction problem in steelmaking

por Saigo, Hiroto, KC, Dukka B., Saito, Noritaka
Publicado 2022

pLMSNOSite: an ensemble-based approach for predicting protein S-nitrosylation sites by integrating supervised word embedding and embedding from pre-trained protein language model

por Pratyush, Pawel, Pokharel, Suresh, Saigo, Hiroto, KC, Dukka B.
Publicado 2023

Parallel-SymD: A Parallel Approach to Detect Internal Symmetry in Protein Domains

por Jha, Ashwani, Flurchick, K. M., Bikdash, Marwan, KC, Dukka B.
Publicado 2016

CNN-BLPred: a Convolutional neural network based predictor for β-Lactamases (BL) and their classes

por White, Clarence, Ismail, Hamid D., Saigo, Hiroto, KC, Dukka B.
Publicado 2017

Deep Learning-Based Advances in Protein Structure Prediction

por Pakhrin, Subash C., Shrestha, Bikash, Adhikari, Badri, KC, Dukka B.
Publicado 2021

DFT-aided machine learning-based discovery of magnetism in Fe-based bimetallic chalcogenides

por Pant, Dharmendra, Pokharel, Suresh, Mandal, Subhasish, KC, Dukka B., Pati, Ranjit
Publicado 2023

Integrating Embeddings from Multiple Protein Language Models to Improve Protein O-GlcNAc Site Prediction

por Pokharel, Suresh, Pratyush, Pawel, Ismail, Hamid D., Ma, Junfeng, KC, Dukka B.
Publicado 2023

The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches

por Khan, Ishita K., Wei, Qing, Chapman, Samuel, KC, Dukka B., Kihara, Daisuke
Publicado 2015

DeepNGlyPred: A Deep Neural Network-Based Approach for Human N-Linked Glycosylation Site Prediction

por Pakhrin, Subash C., Aoki-Kinoshita, Kiyoko F., Caragea, Doina, KC, Dukka B.
Publicado 2021

Improving protein succinylation sites prediction using embeddings from protein language model

por Pokharel, Suresh, Pratyush, Pawel, Heinzinger, Michael, Newman, Robert H., KC, Dukka B.
Publicado 2022

RF-Phos: A Novel General Phosphorylation Site Prediction Tool Based on Random Forest

por Ismail, Hamid D., Jones, Ahoi, Kim, Jung H., Newman, Robert H., KC, Dukka B.
Publicado 2016

Experimental Study: Deep Learning-Based Fall Monitoring among Older Adults with Skin-Wearable Electronics

por Lee, Yongkuk, Pokharel, Suresh, Muslim, Asra Al, KC, Dukka B., Lee, Kyoung Hag, Yeo, Woon-Hong
Publicado 2023

DeepSuccinylSite: a deep learning based approach for protein succinylation site prediction

por Thapa, Niraj, Chaudhari, Meenal, McManus, Sean, Roy, Kaushik, Newman, Robert H., Saigo, Hiroto, KC, Dukka B.
Publicado 2020

Correction: DeepSuccinylSite: a deep learning based approach for protein succinylation site prediction

por Thapa, Niraj, Chaudhari, Meenal, McManus, Sean, Roy, Kaushik, Newman, Robert H., Saigo, Hiroto, KC, Dukka B.
Publicado 2022

DTL-DephosSite: Deep Transfer Learning Based Approach to Predict Dephosphorylation Sites

por Chaudhari, Meenal, Thapa, Niraj, Ismail, Hamid, Chopade, Sandhya, Caragea, Doina, Köhn, Maja, Newman, Robert H., KC, Dukka B.
Publicado 2021

SVM-SulfoSite: A support vector machine based predictor for sulfenylation sites

por AL-barakati, Hussam J., McConnell, Evan W., Hicks, Leslie M., Poole, Leslie B., Newman, Robert H., KC, Dukka B.
Publicado 2018

A deep learning based approach for prediction of Chlamydomonas reinhardtii phosphorylation sites

por Thapa, Niraj, Chaudhari, Meenal, Iannetta, Anthony A., White, Clarence, Roy, Kaushik, Newman, Robert H., Hicks, Leslie M., KC, Dukka B.
Publicado 2021

Hydrogen peroxide-dependent oxidation of ERK2 within its D-recruitment site alters its substrate selection

por Postiglione, Anthony E., Adams, Laquaundra L., Ekhator, Ese S., Odelade, Anuoluwapo E., Patwardhan, Supriya, Chaudhari, Meenal, Pardue, Avery S., Kumari, Anjali, LeFever, William A., Tornow, Olivia P., Kaoud, Tamer S., Neiswinger, Johnathan, Jeong, Jun Seop, Parsonage, Derek, Nelson, Kimberly J., Kc, Dukka B., Furdui, Cristina M., Zhu, Heng, Wommack, Andrew J., Dalby, Kevin N., Dong, Ming, Poole, Leslie B., Keyes, Jeremiah D., Newman, Robert H.
Publicado 2023