Community Detection in Large-Scale Bipartite Biological Networks

por Calderer, Genís, Kuijjer, Marieke L.
Publicado 2021

Editorial: Applications and Methods in Genomic Networks

por Fagny, Maud, Glass, Kimberly, Kuijjer, Marieke L.
Publicado 2022

rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

por Osorio, Daniel, Kuijjer, Marieke L, Cai, James J
Publicado 2021

lionessR: single sample network inference in R

por Kuijjer, Marieke L, Hsieh, Ping-Han, Quackenbush, John, Glass, Kimberly
Publicado 2019

Clustering Sparse Data With Feature Correlation With Application to Discover Subtypes in Cancer

por QIANG, JIPENG, DING, WEI, KUIJJER, MARIEKE, QUACKENBUSH, JOHN, CHEN, PING
Publicado 2020

Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function

por Fagny, Maud, Platig, John, Kuijjer, Marieke Lydia, Lin, Xihong, Quackenbush, John
Publicado 2019

PUMA: PANDA Using MicroRNA Associations

por Kuijjer, Marieke L, Fagny, Maud, Marin, Alessandro, Quackenbush, John, Glass, Kimberly
Publicado 2020

PyPanda: a Python package for gene regulatory network reconstruction

por van IJzendoorn, David G.P., Glass, Kimberly, Quackenbush, John, Kuijjer, Marieke L.
Publicado 2016

Cancer subtype identification using somatic mutation data

por Kuijjer, Marieke Lydia, Paulson, Joseph Nathaniel, Salzman, Peter, Ding, Wei, Quackenbush, John
Publicado 2018

Estimating Sample-Specific Regulatory Networks

por Kuijjer, Marieke Lydia, Tung, Matthew George, Yuan, GuoCheng, Quackenbush, John, Glass, Kimberly
Publicado 2019

Heterogeneity in the gene regulatory landscape of leiomyosarcoma

por Belova, Tatiana, Biondi, Nicola, Hsieh, Ping-Han, Lutsik, Pavlo, Chudasama, Priya, Kuijjer, Marieke L
Publicado 2023

Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data

por Hsieh, Ping-Han, Lopes-Ramos, Camila Miranda, Zucknick, Manuela, Sandve, Geir Kjetil, Glass, Kimberly, Kuijjer, Marieke Lydia
Publicado 2023

gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit

por Guebila, Marouen Ben, Morgan, Daniel C, Glass, Kimberly, Kuijjer, Marieke L, DeMeo, Dawn L, Quackenbush, John
Publicado 2022

Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks

por Fagny, Maud, Kuijjer, Marieke Lydia, Stam, Maike, Joets, Johann, Turc, Olivier, Rozière, Julien, Pateyron, Stéphanie, Venon, Anthony, Vitte, Clémentine
Publicado 2021

Discovery of novel candidates for anti-liposarcoma therapies by medium-scale high-throughput drug screening

por Grad, Iwona, Hanes, Robert, Ayuda-Durán, Pilar, Kuijjer, Marieke Lydia, Enserink, Jorrit M., Meza-Zepeda, Leonardo A., Myklebost, Ola
Publicado 2021

Regulatory Network of PD1 Signaling Is Associated with Prognosis in Glioblastoma Multiforme

por Lopes-Ramos, Camila M., Belova, Tatiana, Brunner, Tess H., Ben Guebila, Marouen, Osorio, Daniel, Quackenbush, John, Kuijjer, Marieke L.
Publicado 2021

Linking Immunity with Genomics in Sarcomas: Is Genomic Complexity an Immunogenic Trigger?

por van Oost, Siddh, Meijer, Debora M., Kuijjer, Marieke L., Bovée, Judith V. M. G., de Miranda, Noel F. C. C.
Publicado 2021

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas

por van IJzendoorn, David G. P., Szuhai, Karoly, Briaire-de Bruijn, Inge H., Kostine, Marie, Kuijjer, Marieke L., Bovée, Judith V. M. G.
Publicado 2019

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

por Paulson, Joseph N., Chen, Cho-Yi, Lopes-Ramos, Camila M., Kuijjer, Marieke L., Platig, John, Sonawane, Abhijeet R., Fagny, Maud, Glass, Kimberly, Quackenbush, John
Publicado 2017

GRAND: a database of gene regulatory network models across human conditions

por Ben Guebila, Marouen, Lopes-Ramos, Camila M, Weighill, Deborah, Sonawane, Abhijeet Rajendra, Burkholz, Rebekka, Shamsaei, Behrouz, Platig, John, Glass, Kimberly, Kuijjer, Marieke L, Quackenbush, John
Publicado 2021