Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

por Kaas, Rolf S., Leekitcharoenphon, Pimlapas, Aarestrup, Frank M., Lund, Ole
Publicado 2014

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

por Kaas, Rolf S, Friis, Carsten, Ussery, David W, Aarestrup, Frank M
Publicado 2012

Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica

por Leekitcharoenphon, Pimlapas, Nielsen, Eva M., Kaas, Rolf S., Lund, Ole, Aarestrup, Frank M.
Publicado 2014

Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns

por Poulsen, Casper Sahl, Kaas, Rolf Sommer, Aarestrup, Frank M., Pamp, Sünje Johanna
Publicado 2021

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data

por Leekitcharoenphon, Pimlapas, Kaas, Rolf S, Thomsen, Martin Christen Frølund, Friis, Carsten, Rasmussen, Simon, Aarestrup, Frank M
Publicado 2012

Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival

por Christiansen, Mette T., Kaas, Rolf S., Chaudhuri, Roy R., Holmes, Mark A., Hasman, Henrik, Aarestrup, Frank M.
Publicado 2014

Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand

por Siriphap, Achiraya, Leekitcharoenphon, Pimlapas, Kaas, Rolf S., Theethakaew, Chonchanok, Aarestrup, Frank M., Sutheinkul, Orasa, Hendriksen, Rene S.
Publicado 2017

The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010

por Kaas, Rolf S., Ngandjio, Antoinette, Nzouankeu, Ariane, Siriphap, Achiraya, Fonkoua, Marie-Christine, Aarestrup, Frank M., Hendriksen, Rene S.
Publicado 2016

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

por Roer, Louise, Hendriksen, Rene S., Leekitcharoenphon, Pimlapas, Lukjancenko, Oksana, Kaas, Rolf Sommer, Hasman, Henrik, Aarestrup, Frank M.
Publicado 2016

ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

por Florensa, Alfred Ferrer, Kaas, Rolf Sommer, Clausen, Philip Thomas Lanken Conradsen, Aytan-Aktug, Derya, Aarestrup, Frank M.
Publicado 2022

Draft Genome Sequence of Acinetobacter johnsonii C6, an Environmental Isolate Engaging in Interspecific Metabolic Interactions

por Kaas, Rolf Sommer, Mordhorst, Hanne, Leekitcharoenphon, Pimlapas, Dyring Jensen, Jacob, Haagensen, Janus A. J., Molin, Søren, Pamp, Sünje Johanna
Publicado 2017

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering

por Jespersen, Marie Louise, Munk, Patrick, Johansen, Joachim, Kaas, Rolf Sommer, Webel, Henry, Vigre, Håkan, Nielsen, Henrik Bjørn, Rasmussen, Simon, Aarestrup, Frank M.
Publicado 2023

Veillonella, Firmicutes: Microbes disguised as Gram negatives

por Vesth, Tammi, Ozen, Aslı, Andersen, Sandra C., Kaas, Rolf Sommer, Lukjancenko, Oksana, Bohlin, Jon, Nookaew, Intawat, Wassenaar, Trudy M., Ussery, David W.
Publicado 2013

Worldwide human mitochondrial haplogroup distribution from urban sewage

por Pipek, Orsolya Anna, Medgyes-Horváth, Anna, Dobos, László, Stéger, József, Szalai-Gindl, János, Visontai, Dávid, Kaas, Rolf S., Koopmans, Marion, Hendriksen, Rene S., Aarestrup, Frank M., Csabai, István
Publicado 2019

Fatal Septicemia Linked to Transmission of MRSA Clonal Complex 398 in Hospital and Nursing Home, Denmark

por Nielsen, Rikke Thoft, Kemp, Michael, Holm, Anette, Skov, Marianne Nielsine, Detlefsen, Mette, Hasman, Henrik, Aarestrup, Frank Møller, Kaas, Rolf Sommer, Nielsen, Jesper Boye, Westh, Henrik, Kolmos, Hans Jørn
Publicado 2016

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes

por Henri, Clémentine, Leekitcharoenphon, Pimlapas, Carleton, Heather A., Radomski, Nicolas, Kaas, Rolf S., Mariet, Jean-François, Felten, Arnaud, Aarestrup, Frank M., Gerner Smidt, Peter, Roussel, Sophie, Guillier, Laurent, Mistou, Michel-Yves, Hendriksen, René S.
Publicado 2017

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

por Munck, Nanna, Leekitcharoenphon, Pimlapas, Litrup, Eva, Kaas, Rolf, Meinen, Anika, Guillier, Laurent, Tang, Yue, Malorny, Burkhard, Palma, Federica, Borowiak, Maria, Gourmelon, Michèle, Simon, Sandra, Banerji, Sangeeta, Petrovska, Liljana, Dallman, Timothy J., Hald, Tine
Publicado 2020

Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak

por Hendriksen, Rene S., Price, Lance B., Schupp, James M., Gillece, John D., Kaas, Rolf S., Engelthaler, David M., Bortolaia, Valeria, Pearson, Talima, Waters, Andrew E., Prasad Upadhyay, Bishnu, Devi Shrestha, Sirjana, Adhikari, Shailaja, Shakya, Geeta, Keim, Paul S., Aarestrup, Frank M.
Publicado 2011

Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance

por Duarte, Ana Sofia Ribeiro, Stärk, Katharina D. C., Munk, Patrick, Leekitcharoenphon, Pimlapas, Bossers, Alex, Luiken, Roosmarijn, Sarrazin, Steven, Lukjancenko, Oksana, Pamp, Sünje Johanna, Bortolaia, Valeria, Nissen, Jakob Nybo, Kirstahler, Philipp, Van Gompel, Liese, Poulsen, Casper Sahl, Kaas, Rolf Sommer, Hellmér, Maria, Hansen, Rasmus Borup, Gomez, Violeta Munoz, Hald, Tine
Publicado 2020

ResFinder 4.0 for predictions of phenotypes from genotypes

por Bortolaia, Valeria, Kaas, Rolf S, Ruppe, Etienne, Roberts, Marilyn C, Schwarz, Stefan, Cattoir, Vincent, Philippon, Alain, Allesoe, Rosa L, Rebelo, Ana Rita, Florensa, Alfred Ferrer, Fagelhauer, Linda, Chakraborty, Trinad, Neumann, Bernd, Werner, Guido, Bender, Jennifer K, Stingl, Kerstin, Nguyen, Minh, Coppens, Jasmine, Xavier, Basil Britto, Malhotra-Kumar, Surbhi, Westh, Henrik, Pinholt, Mette, Anjum, Muna F, Duggett, Nicholas A, Kempf, Isabelle, Nykäsenoja, Suvi, Olkkola, Satu, Wieczorek, Kinga, Amaro, Ana, Clemente, Lurdes, Mossong, Joël, Losch, Serge, Ragimbeau, Catherine, Lund, Ole, Aarestrup, Frank M
Publicado 2020