Host-Microbe Metagenomics: a Lens To Refocus Our Perspective on Infectious and Inflammatory Diseases

por Kalantar, Katrina L., Langelier, Charles R.
Publicado 2021

Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers

por Langelier, Charles, Graves, Michael, Kalantar, Katrina, Caldera, Saharai, Durrant, Robert, Fisher, Mark, Backman, Richard, Tanner, Windy, DeRisi, Joseph L., Leung, Daniel T.
Publicado 2019

The antibiotic resistance reservoir of the lung microbiome expands with age

por Chu, Victoria T., Tsitsiklis, Alexandra, Mick, Eran, Ambroggio, Lilliam, Kalantar, Katrina L., Glascock, Abigail, Osborne, Christina M., Wagner, Brandie D., Matthay, Michael A., DeRisi, Joseph L., Calfee, Carolyn S., Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections

por Raghavan, Madhura, Kalantar, Katrina L, Duarte, Elias, Teyssier, Noam, Takahashi, Saki, Kung, Andrew F, Rajan, Jayant V, Rek, John, Tetteh, Kevin KA, Drakeley, Chris, Ssewanyana, Isaac, Rodriguez-Barraquer, Isabel, Greenhouse, Bryan, DeRisi, Joseph L
Publicado 2023

Building up a genomic surveillance platform for SARS-CoV-2 in the middle of a pandemic: a true North–South collaboration

por Khan, Waqasuddin, Kabir, Furqan, Kanwar, Samiah, Aziz, Fatima, Muneer, Sahrish, Kalam, Adil, Rajab Ali, Mehdia Nadeem, Ansari, Nadia, Vanaerschot, Manu, Ahyong, Vida, Fahsbender, Liz, Kalantar, Katrina, Black, Allison, Glascock, Abigail, Gil, Juliana, Ayscue, Patrick, Tato, Cristina, Jehan, Fyezah, Nisar, Imran
Publicado 2023

Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda

por Ramesh, Akshaya, Nakielny, Sara, Hsu, Jennifer, Kyohere, Mary, Byaruhanga, Oswald, de Bourcy, Charles, Egger, Rebecca, Dimitrov, Boris, Juan, Yun-Fang, Sheu, Jonathan, Wang, James, Kalantar, Katrina, Langelier, Charles, Ruel, Theodore, Mpimbaza, Arthur, Wilson, Michael R., Rosenthal, Philip J., DeRisi, Joseph L.
Publicado 2019

Co-occurrence of Campylobacter Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host Microbiome

por Terefe, Yitagele, Deblais, Loïc, Ghanem, Mostafa, Helmy, Yosra A., Mummed, Bahar, Chen, Dehao, Singh, Nitya, Ahyong, Vida, Kalantar, Katrina, Yimer, Getnet, Yousuf Hassen, Jemal, Mohammed, Abdulmuen, McKune, Sarah L., Manary, Mark J., Ordiz, Maria Isabel, Gebreyes, Wondwossen, Havelaar, Arie H., Rajashekara, Gireesh
Publicado 2020

Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections

por Serpa, Paula Hayakawa, Deng, Xianding, Abdelghany, Mazin, Crawford, Emily, Malcolm, Katherine, Caldera, Saharai, Fung, Monica, McGeever, Aaron, Kalantar, Katrina L., Lyden, Amy, Ghale, Rajani, Deiss, Thomas, Neff, Norma, Miller, Steven A., Doernberg, Sarah B., Chiu, Charles Y., DeRisi, Joseph L., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

por Mick, Eran, Tsitsiklis, Alexandra, Kamm, Jack, Kalantar, Katrina L., Caldera, Saharai, Lyden, Amy, Tan, Michelle, Detweiler, Angela M., Neff, Norma, Osborne, Christina M., Williamson, Kayla M., Soesanto, Victoria, Leroue, Matthew, Maddux, Aline B., Simões, Eric A.F., Carpenter, Todd C., Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children

por Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, McGarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristen, Melton, Alexis, Yanik, Gregory A, Sapru, Anil, DeRisi, Joseph L
Publicado 2019

Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults

por Kalantar, Katrina L., Neyton, Lucile, Abdelghany, Mazin, Mick, Eran, Jauregui, Alejandra, Caldera, Saharai, Serpa, Paula Hayakawa, Ghale, Rajani, Albright, Jack, Sarma, Aartik, Tsitsiklis, Alexandra, Leligdowicz, Aleksandra, Christenson, Stephanie A., Liu, Kathleen, Kangelaris, Kirsten N., Hendrickson, Carolyn, Sinha, Pratik, Gomez, Antonio, Neff, Norma, Pisco, Angela, Doernberg, Sarah B., Derisi, Joseph L., Matthay, Michael A., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

por Langelier, Charles, Kalantar, Katrina L., Moazed, Farzad, Wilson, Michael R., Crawford, Emily D., Deiss, Thomas, Belzer, Annika, Bolourchi, Samaneh, Caldera, Saharai, Fung, Monica, Jauregui, Alejandra, Malcolm, Katherine, Lyden, Amy, Khan, Lillian, Vessel, Kathryn, Quan, Jenai, Zinter, Matt, Chiu, Charles Y., Chow, Eric D., Wilson, Jenny, Miller, Steve, Matthay, Michael A., Pollard, Katherine S., Christenson, Stephanie, Calfee, Carolyn S., DeRisi, Joseph L.
Publicado 2018

Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens

por Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M., Mayday, Madeline Y., Sajib, M. S. I., Li, Lucy M., Langelier, Charles, Rahman, Hafizur, Crawford, Emily D., Tato, Cristina M., Islam, Maksuda, Juan, Yun-Fang, de Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, De Carvalho, Tiago Rodrigues, Wilson, Michael R., Saha, Samir K., DeRisi, Joseph L.
Publicado 2019

Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system

por Bohl, Jennifer A., Lay, Sreyngim, Chea, Sophana, Ahyong, Vida, Parker, Daniel M., Gallagher, Shannon, Fintzi, Jonathan, Man, Somnang, Ponce, Aiyana, Sreng, Sokunthea, Kong, Dara, Oliveira, Fabiano, Kalantar, Katrina, Tan, Michelle, Fahsbender, Liz, Sheu, Jonathan, Neff, Norma, Detweiler, Angela M., Yek, Christina, Ly, Sokna, Sath, Rathanak, Huch, Chea, Kry, Hok, Leang, Rithea, Huy, Rekol, Lon, Chanthap, Tato, Cristina M., DeRisi, Joseph L., Manning, Jessica E.
Publicado 2022

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

por Kalantar, Katrina L, Carvalho, Tiago, de Bourcy, Charles F A, Dimitrov, Boris, Dingle, Greg, Egger, Rebecca, Han, Julie, Holmes, Olivia B, Juan, Yun-Fang, King, Ryan, Kislyuk, Andrey, Lin, Michael F, Mariano, Maria, Morse, Todd, Reynoso, Lucia V, Cruz, David Rissato, Sheu, Jonathan, Tang, Jennifer, Wang, James, Zhang, Mark A, Zhong, Emily, Ahyong, Vida, Lay, Sreyngim, Chea, Sophana, Bohl, Jennifer A, Manning, Jessica E, Tato, Cristina M, DeRisi, Joseph L
Publicado 2020

Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics

por Tsitsiklis, Alexandra, Osborne, Christina M, Kamm, Jack, Williamson, Kayla, Kalantar, Katrina, Dudas, Gytis, Caldera, Saharai, Lyden, Amy, Tan, Michelle, Neff, Norma, Soesanto, Victoria, Harris, J Kirk, Ambroggio, Lilliam, Maddux, Aline B, Carpenter, Todd C, Reeder, Ron W, Locandro, Chris, Simões, Eric A F, Leroue, Matthew K, Hall, Mark W, Zuppa, Athena F, Carcillo, Joseph, Meert, Kathleen L, Sapru, Anil, Pollack, Murray M, McQuillen, Patrick S, Notterman, Daniel A, Dean, J Michael, Zinter, Matt S, Wagner, Brandie D, DeRisi, Joseph L, Mourani, Peter M, Langelier, Charles R
Publicado 2022

Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries

por Perier, Celine, Nasinghe, Emmanuel, Charles, Isabelle, Ssetaba, Leoson Junior, Ahyong, Vida, Bangs, Derek, Beatty, P. Robert, Czudnochowski, Nadine, Diallo, Amy, Dugan, Eli, Fabius, Jacqueline M., Fong Baker, Hildy, Gardner, Jackson, Isaacs, Stephen, Joanah, Birungi, Kalantar, Katrina, Kateete, David, Knight, Matt, Krasilnikov, Maria, Krogan, Nevan J., Langelier, Chaz, Lee, Eric, Li, Lucy M., Licht, Daniel, Lien, Katie, Lyons, Zilose, Mboowa, Gerald, Mwebaza, Ivan, Mwesigwa, Savannah, Nalwadda, Geraldine, Nichols, Robert, Penaranda, Maria Elena, Petnic, Sarah, Phelps, Maira, Popper, Stephen J., Rape, Michael, Reingold, Arthur, Robbins, Richard, Rosenberg, Oren S., Savage, David F., Schildhauer, Samuel, Settles, Matthew L., Sserwadda, Ivan, Stanley, Sarah, Tato, Cristina M., Tsitsiklis, Alexandra, Van Dis, Erik, Vanaerschot, Manu, Vinden, Joanna, Cox, Jeffery S., Joloba, Moses L., Schaletzky, Julia
Publicado 2022