Host-Microbe Metagenomics: a Lens To Refocus Our Perspective on Infectious and Inflammatory Diseases

por Kalantar, Katrina L., Langelier, Charles R.
Publicado 2021

The antibiotic resistance reservoir of the lung microbiome expands with age

por Chu, Victoria T., Tsitsiklis, Alexandra, Mick, Eran, Ambroggio, Lilliam, Kalantar, Katrina L., Glascock, Abigail, Osborne, Christina M., Wagner, Brandie D., Matthay, Michael A., DeRisi, Joseph L., Calfee, Carolyn S., Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections

por Raghavan, Madhura, Kalantar, Katrina L, Duarte, Elias, Teyssier, Noam, Takahashi, Saki, Kung, Andrew F, Rajan, Jayant V, Rek, John, Tetteh, Kevin KA, Drakeley, Chris, Ssewanyana, Isaac, Rodriguez-Barraquer, Isabel, Greenhouse, Bryan, DeRisi, Joseph L
Publicado 2023

Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections

por Serpa, Paula Hayakawa, Deng, Xianding, Abdelghany, Mazin, Crawford, Emily, Malcolm, Katherine, Caldera, Saharai, Fung, Monica, McGeever, Aaron, Kalantar, Katrina L., Lyden, Amy, Ghale, Rajani, Deiss, Thomas, Neff, Norma, Miller, Steven A., Doernberg, Sarah B., Chiu, Charles Y., DeRisi, Joseph L., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

por Mick, Eran, Tsitsiklis, Alexandra, Kamm, Jack, Kalantar, Katrina L., Caldera, Saharai, Lyden, Amy, Tan, Michelle, Detweiler, Angela M., Neff, Norma, Osborne, Christina M., Williamson, Kayla M., Soesanto, Victoria, Leroue, Matthew, Maddux, Aline B., Simões, Eric A.F., Carpenter, Todd C., Wagner, Brandie D., DeRisi, Joseph L., Ambroggio, Lilliam, Mourani, Peter M., Langelier, Charles R.
Publicado 2023

Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults

por Kalantar, Katrina L., Neyton, Lucile, Abdelghany, Mazin, Mick, Eran, Jauregui, Alejandra, Caldera, Saharai, Serpa, Paula Hayakawa, Ghale, Rajani, Albright, Jack, Sarma, Aartik, Tsitsiklis, Alexandra, Leligdowicz, Aleksandra, Christenson, Stephanie A., Liu, Kathleen, Kangelaris, Kirsten N., Hendrickson, Carolyn, Sinha, Pratik, Gomez, Antonio, Neff, Norma, Pisco, Angela, Doernberg, Sarah B., Derisi, Joseph L., Matthay, Michael A., Calfee, Carolyn S., Langelier, Charles R.
Publicado 2022

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

por Langelier, Charles, Kalantar, Katrina L., Moazed, Farzad, Wilson, Michael R., Crawford, Emily D., Deiss, Thomas, Belzer, Annika, Bolourchi, Samaneh, Caldera, Saharai, Fung, Monica, Jauregui, Alejandra, Malcolm, Katherine, Lyden, Amy, Khan, Lillian, Vessel, Kathryn, Quan, Jenai, Zinter, Matt, Chiu, Charles Y., Chow, Eric D., Wilson, Jenny, Miller, Steve, Matthay, Michael A., Pollard, Katherine S., Christenson, Stephanie, Calfee, Carolyn S., DeRisi, Joseph L.
Publicado 2018

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

por Kalantar, Katrina L, Carvalho, Tiago, de Bourcy, Charles F A, Dimitrov, Boris, Dingle, Greg, Egger, Rebecca, Han, Julie, Holmes, Olivia B, Juan, Yun-Fang, King, Ryan, Kislyuk, Andrey, Lin, Michael F, Mariano, Maria, Morse, Todd, Reynoso, Lucia V, Cruz, David Rissato, Sheu, Jonathan, Tang, Jennifer, Wang, James, Zhang, Mark A, Zhong, Emily, Ahyong, Vida, Lay, Sreyngim, Chea, Sophana, Bohl, Jennifer A, Manning, Jessica E, Tato, Cristina M, DeRisi, Joseph L
Publicado 2020