Prevention of host-to-host transmission by SARS-CoV-2 vaccines

por Mostaghimi, Darius, Valdez, Caroline N, Larson, Haleigh T, Kalinich, Chaney C, Iwasaki, Akiko
Publicado 2022

Assessment of Clinical Effectiveness of BNT162b2 COVID-19 Vaccine in US Adolescents

por Oliveira, Carlos R., Niccolai, Linda M., Sheikha, Hassan, Elmansy, Lina, Kalinich, Chaney C., Grubaugh, Nathan D., Shapiro, Eugene D.
Publicado 2022

The sensitivity of respiratory tract specimens for the detection of SARS-CoV-2: A protocol for a living systematic review and meta-analysis

por Moore, Adam J., Nakahata, Maura I., Kalinich, Chaney C., Nyhan, Kate, Bromberg, Daniel J., Shi, Xiaoting, Ko, Albert I., Grubaugh, Nathan D., Casanovas-Massana, Arnau, Wyllie, Anne L.
Publicado 2020

Real-time public health communication of local SARS-CoV-2 genomic epidemiology

por Kalinich, Chaney C., Jensen, Cole G., Neugebauer, Peter, Petrone, Mary E., Peña-Hernández, Mario, Ott, Isabel M., Wyllie, Anne L., Alpert, Tara, Vogels, Chantal B. F., Fauver, Joseph R., Grubaugh, Nathan D., Brito, Anderson F.
Publicado 2020

362. Saliva as a Reliable Sample Type for Mass SARS-CoV-2 Testing Strategies

por Wyllie, Anne, Vogels, Chantal B, Allicock, Orchid M, Watkins, Anne, Petrone, Mary, Yolda-Carr, Devyn, Harden, Christina, Brackney, Doug, Kalinich, Chaney C, Breban, Mallery I, Ott, Isabel M, Sikka, Robby, Kadiri, Lolahon, Grubaugh, Nathan D
Publicado 2021

Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies

por Kissler, Stephen M., Fauver, Joseph R., Mack, Christina, Olesen, Scott W., Tai, Caroline, Shiue, Kristin Y., Kalinich, Chaney C., Jednak, Sarah, Ott, Isabel M., Vogels, Chantal B. F., Wohlgemuth, Jay, Weisberger, James, DiFiori, John, Anderson, Deverick J., Mancell, Jimmie, Ho, David D., Grubaugh, Nathan D., Grad, Yonatan H.
Publicado 2021

Tracing the Origin, Spread, and Molecular Evolution of Zika Virus in Puerto Rico, 2016–2017

por Santiago, Gilberto A., Kalinich, Chaney C., Cruz-López, Fabiola, González, Glenda L., Flores, Betzabel, Hentoff, Aaron, Charriez, Keyla N., Fauver, Joseph R., Adams, Laura E., Sharp, Tyler M., Black, Allison, Bedford, Trevor, Ellis, Esther, Ellis, Brett, Waterman, Steve H., Paz-Bailey, Gabriela, Grubaugh, Nathan D., Muñoz-Jordán, Jorge L.
Publicado 2021

Simply saliva: stability of SARS-CoV-2 detection negates the need for expensive collection devices

por Ott, Isabel M., Strine, Madison S., Watkins, Anne E., Boot, Maikel, Kalinich, Chaney C., Harden, Christina A., Vogels, Chantal B.F., Casanovas-Massana, Arnau, Moore, Adam J., Muenker, M. Catherine, Nakahata, Maura, Tokuyama, Maria, Nelson, Allison, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Dela Cruz, Charles S., Farhadian, Shelli F., Ko, Albert I., Iwasaki, Akiko, Grubaugh, Nathan D., Wilen, Craig B., Wyllie, Anne L.
Publicado 2020

Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva

por Ott, Isabel M., Strine, Madison S., Watkins, Anne E., Boot, Maikel, Kalinich, Chaney C., Harden, Christina A., Vogels, Chantal B.F., Casanovas-Massana, Arnau, Moore, Adam J., Muenker, M. Catherine, Nakahata, Maura, Tokuyama, Maria, Nelson, Allison, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Dela Cruz, Charles S., Farhadian, Shelli F., Ko, Albert I., Iwasaki, Akiko, Grubaugh, Nathan D., Wilen, Craig B., Wyllie, Anne L.
Publicado 2021

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B.F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle, Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika, Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle, Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2021

Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons

por Chaguza, Chrispin, Coppi, Andreas, Earnest, Rebecca, Ferguson, David, Kerantzas, Nicholas, Warner, Frederick, Young, H. Patrick, Breban, Mallery I., Billig, Kendall, Koch, Robert Tobias, Pham, Kien, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Hahn, Anne M., Tikhonova, Irina R., Castaldi, Christopher, De Kumar, Bony, Pettker, Christian M., Warren, Joshua L., Weinberger, Daniel M., Landry, Marie L., Peaper, David R., Schulz, Wade, Vogels, Chantal B.F., Grubaugh, Nathan D.
Publicado 2022

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

por Baaijens, Jasmijn A., Zulli, Alessandro, Ott, Isabel M., Nika, Ioanna, van der Lugt, Mart J., Petrone, Mary E., Alpert, Tara, Fauver, Joseph R., Kalinich, Chaney C., Vogels, Chantal B. F., Breban, Mallery I., Duvallet, Claire, McElroy, Kyle A., Ghaeli, Newsha, Imakaev, Maxim, Mckenzie-Bennett, Malaika F., Robison, Keith, Plocik, Alex, Schilling, Rebecca, Pierson, Martha, Littlefield, Rebecca, Spencer, Michelle L., Simen, Birgitte B., Hanage, William P., Grubaugh, Nathan D., Peccia, Jordan, Baym, Michael
Publicado 2022

Diverse Functional Autoantibodies in Patients with COVID-19

por Wang, Eric Y., Mao, Tianyang, Klein, Jon, Dai, Yile, Huck, John D., Liu, Feimei, Zheng, Neil S., Zhou, Ting, Israelow, Benjamin, Wong, Patrick, Lucas, Carolina, Silva, Julio, Oh, Ji Eun, Song, Eric, Perotti, Emily S., Fischer, Suzanne, Campbell, Melissa, Fournier, John B., Wyllie, Anne L., Vogels, Chantal B. F., Ott, Isabel M., Kalinich, Chaney C., Petrone, Mary E., Watkins, Anne E., Cruz, Charles Dela, Farhadian, Shelli F., Schulz, Wade L., Grubaugh, Nathan D., Ko, Albert I., Iwasaki, Akiko, Ring, Aaron M.
Publicado 2021

Lying in wait: the resurgence of dengue virus after the Zika epidemic in Brazil

por Brito, Anderson Fernandes, Machado, Lais Ceschini, Oidtman, Rachel J., Siconelli, Márcio Junio Lima, Tran, Quan Minh, Fauver, Joseph R., Carvalho, Rodrigo Dias de Oliveira, Dezordi, Filipe Zimmer, Pereira, Mylena Ribeiro, de Castro-Jorge, Luiza Antunes, Minto, Elaine Cristina Manini, Passos, Luzia Márcia Romanholi, Kalinich, Chaney C., Petrone, Mary E., Allen, Emma, España, Guido Camargo, Huang, Angkana T., Cummings, Derek A. T., Baele, Guy, Franca, Rafael Freitas Oliveira, da Fonseca, Benedito Antônio Lopes, Perkins, T. Alex, Wallau, Gabriel Luz, Grubaugh, Nathan D.
Publicado 2021

Saliva viral load is a dynamic unifying correlate of COVID-19 severity and mortality

por Silva, Julio, Lucas, Carolina, Sundaram, Maria, Israelow, Benjamin, Wong, Patrick, Klein, Jon, Tokuyama, Maria, Lu, Peiwen, Venkataraman, Arvind, Liu, Feimei, Mao, Tianyang, Oh, Ji Eun, Park, Annsea, Casanovas-Massana, Arnau, Vogels, Chantal B. F., Muenker, M. Catherine, Zell, Joseph, Fournier, John B., Campbell, Melissa, Chiorazzi, Michael, Fuentes, Edwin Ruiz, Petrone, Mary E, Kalinich, Chaney C., Ott, Isabel M., Watkins, Annie, Moore, Adam J., Nakahata, Maura, Farhadian, Shelli, Cruz, Charles Dela, Ko, Albert I., Schulz, Wade L., Ring, Aaron, Ma, Shuangge, Omer, Saad, Wyllie, Anne L, Iwasaki, Akiko
Publicado 2021

SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity

por Vogels, Chantal B.F., Watkins, Anne E., Harden, Christina A., Brackney, Doug E., Shafer, Jared, Wang, Jianhui, Caraballo, César, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Kudo, Eriko, Lu, Peiwen, Venkataraman, Arvind, Tokuyama, Maria, Moore, Adam J., Muenker, M. Catherine, Casanovas-Massana, Arnau, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Nelson, Allison, Dela Cruz, Charles S., Ko, Albert I., Iwasaki, Akiko, Krumholz, Harlan M., Matheus, J.D., Hui, Pei, Liu, Chen, Farhadian, Shelli F., Sikka, Robby, Wyllie, Anne L., Grubaugh, Nathan D.
Publicado 2021

Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States

por Fauver, Joseph R., Petrone, Mary E., Hodcroft, Emma B., Shioda, Kayoko, Ehrlich, Hanna Y., Watts, Alexander G., Vogels, Chantal B.F., Brito, Anderson F., Alpert, Tara, Muyombwe, Anthony, Razeq, Jafar, Downing, Randy, Cheemarla, Nagarjuna R., Wyllie, Anne L., Kalinich, Chaney C., Ott, Isabel M., Quick, Joshua, Loman, Nicholas J., Neugebauer, Karla M., Greninger, Alexander L., Jerome, Keith R., Roychoudhury, Pavitra, Xie, Hong, Shrestha, Lasata, Huang, Meei-Li, Pitzer, Virginia E., Iwasaki, Akiko, Omer, Saad B., Khan, Kamran, Bogoch, Isaac I., Martinello, Richard A., Foxman, Ellen F., Landry, Marie L., Neher, Richard A., Ko, Albert I., Grubaugh, Nathan D.
Publicado 2020

Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology

por Fauver, Joseph R., Petrone, Mary E., Hodcroft, Emma B., Shioda, Kayoko, Ehrlich, Hanna Y., Watts, Alexander G., Vogels, Chantal B.F., Brito, Anderson F., Alpert, Tara, Muyombwe, Anthony, Razeq, Jafar, Downing, Randy, Cheemarla, Nagarjuna R., Wyllie, Anne L., Kalinich, Chaney C., Ott, Isabel, Quick, Joshua, Loman, Nicholas J., Neugebauer, Karla M., Greninger, Alexander L., Jerome, Keith R., Roychoudhury, Pavitra, Xie, Hong, Shrestha, Lasata, Huang, Meei-Li, Pitzer, Virginia E., Iwasaki, Akiko, Omer, Saad B., Khan, Kamran, Bogoch, Isaac I., Martinello, Richard A., Foxman, Ellen F., Landry, Marie L., Neher, Richard A., Ko, Albert I., Grubaugh, Nathan D.
Publicado 2020

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2

por Vogels, Chantal B. F., Breban, Mallery I., Ott, Isabel M., Alpert, Tara, Petrone, Mary E., Watkins, Anne E., Kalinich, Chaney C., Earnest, Rebecca, Rothman, Jessica E., Goes de Jesus, Jaqueline, Morales Claro, Ingra, Magalhães Ferreira, Giulia, Crispim, Myuki A. E., Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J., Hodcroft, Emma B., Mason, Christopher E., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., MacKay, Matthew J., Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L., Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R., Sabino, Ester C., Neher, Richard A., Fauver, Joseph R., Grubaugh, Nathan D.
Publicado 2021

Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages

por Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Ott, Isabel M., Russell, Alexis, Lasek-Nesselquist, Erica, Kelly, Kevin, Omerza, Greg, Renzette, Nicholas, Watkins, Anne E., Kalinich, Chaney C., Alpert, Tara, Brito, Anderson F., Earnest, Rebecca, Tikhonova, Irina R., Castaldi, Christopher, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Altajar, Ahmad, Pearson, Claire, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Niccolai, Linda, Wilson, Madeline S., Anderson, Margaret L., Wang, Jianhui, Liu, Chen, Hui, Pei, Mane, Shrikant, Taylor, Bradford P., Hanage, William P., Landry, Marie L., Peaper, David R., Bilguvar, Kaya, Fauver, Joseph R., Vogels, Chantal B.F., Gardner, Lauren M., Pitzer, Virginia E., St. George, Kirsten, Adams, Mark D., Grubaugh, Nathan D.
Publicado 2021