Hypothesis: Caco‐2 cell rotational 3D mechanogenomic turing patterns have clinical implications to colon crypts

por Zheng, Gen, Kalinin, Alexandr A., Dinov, Ivo D., Meixner, Walter, Zhu, Shengtao, Wiley, John W.
Publicado 2018

SOCRAT: a Dynamic Web Toolbox for Interactive Data Processing, Analysis and Visualization

por Kalinin, Alexandr A., Palanimalai, Selvam, Zhu, Junqi, Wu, Wenyi, Devraj, Nikhil, Ye, Chunchun, Ponarul, Nellie, Husain, Syed S., Dinov, Ivo D.
Publicado 2022

Valproic acid-induced changes of 4D nuclear morphology in astrocyte cells

por Kalinin, Alexandr A., Hou, Xinhai, Ade, Alex S., Fon, Gordon-Victor, Meixner, Walter, Higgins, Gerald A., Sexton, Jonathan Z., Wan, Xiang, Dinov, Ivo D., O’Meara, Matthew J., Athey, Brian D.
Publicado 2021

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification

por Kalinin, Alexandr A., Allyn-Feuer, Ari, Ade, Alex, Fon, Gordon-Victor, Meixner, Walter, Dilworth, David, Husain, Syed S., de Wet, Jeffrey R., Higgins, Gerald A., Zheng, Gen, Creekmore, Amy, Wiley, John W., Verdone, James E., Veltri, Robert W., Pienta, Kenneth J., Coffey, Donald S., Athey, Brian D., Dinov, Ivo D.
Publicado 2018

Publisher Correction: 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification

por Kalinin, Alexandr A., Allyn-Feuer, Ari, Ade, Alex, Fon, Gordon-Victor, Meixner, Walter, Dilworth, David, Husain, Syed S., de Wet, Jeffrey R., Higgins, Gerald A., Zheng, Gen, Creekmore, Amy, Wiley, John W., Verdone, James E., Veltri, Robert W., Pienta, Kenneth J., Coffey, Donald S., Athey, Brian D., Dinov, Ivo D.
Publicado 2018

Ten quick tips for deep learning in biology

por Lee, Benjamin D., Gitter, Anthony, Greene, Casey S., Raschka, Sebastian, Maguire, Finlay, Titus, Alexander J., Kessler, Michael D., Lee, Alexandra J., Chevrette, Marc G., Stewart, Paul Allen, Britto-Borges, Thiago, Cofer, Evan M., Yu, Kun-Hsing, Carmona, Juan Jose, Fertig, Elana J., Kalinin, Alexandr A., Signal, Brandon, Lengerich, Benjamin J., Triche, Timothy J., Boca, Simina M.
Publicado 2022

Reproducible image-based profiling with Pycytominer

por Serrano, Erik, Chandrasekaran, Srinivas Niranj, Bunten, Dave, Brewer, Kenneth I., Tomkinson, Jenna, Kern, Roshan, Bornholdt, Michael, Fleming, Stephen, Pei, Ruifan, Arevalo, John, Tsang, Hillary, Rubinetti, Vincent, Tromans-Coia, Callum, Becker, Tim, Weisbart, Erin, Bunne, Charlotte, Kalinin, Alexandr A., Senft, Rebecca, Taylor, Stephen J., Jamali, Nasim, Adeboye, Adeniyi, Abbasi, Hamdah Shafqat, Goodman, Allen, Caicedo, Juan C., Carpenter, Anne E., Cimini, Beth A., Singh, Shantanu, Way, Gregory P.
Publicado 2023

Opportunities and obstacles for deep learning in biology and medicine

por Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Publicado 2018