Single-Molecule Microscopy Meets Molecular Dynamics Simulations for Characterizing the Molecular Action of Proteins on DNA and in Liquid Condensates

por Kamagata, Kiyoto
Publicado 2021

Intrinsically disordered domain of tumor suppressor p53 facilitates target search by ultrafast transfer between different DNA strands

por Itoh, Yuji, Murata, Agato, Takahashi, Satoshi, Kamagata, Kiyoto
Publicado 2018

How p53 Molecules Solve the Target DNA Search Problem: A Review

por Kamagata, Kiyoto, Itoh, Yuji, Subekti, Dwiky Rendra Graha
Publicado 2020

Single-molecule characterization of target search dynamics of DNA-binding proteins in DNA-condensed droplets

por Kamagata, Kiyoto, Kusano, Ryo, Kanbayashi, Saori, Banerjee, Trishit, Takahashi, Hiroto
Publicado 2023

Engineering of the genome editing protein Cas9 to slide along DNA

por Banerjee, Trishit, Takahashi, Hiroto, Subekti, Dwiky Rendra Graha, Kamagata, Kiyoto
Publicado 2021

Microsecond dynamics of an unfolded protein by a line confocal tracking of single molecule fluorescence

por Oikawa, Hiroyuki, Suzuki, Yuta, Saito, Masataka, Kamagata, Kiyoto, Arai, Munehito, Takahashi, Satoshi
Publicado 2013

Transient binding and jumping dynamics of p53 along DNA revealed by sub-millisecond resolved single-molecule fluorescence tracking

por Subekti, Dwiky Rendra Graha, Murata, Agato, Itoh, Yuji, Takahashi, Satoshi, Kamagata, Kiyoto
Publicado 2020

Rational design of phase separating peptides based on phase separating protein sequence of p53

por Kamagata, Kiyoto, Hando, Atsumi, Ariefai, Maulana, Iwaki, Nanako, Kanbayashi, Saori, Koike, Ryotaro, Ikeda, Keisuke
Publicado 2023

Dependence of DNA length on binding affinity between TrpR and trpO of DNA

por Shimamoto, Nobuo, Toda, Mikito, Nara, Shigetoshi, Komatsuzaki, Tamiki, Kamagata, Kiyoto, Kinebuchi, Takashi, Tomizawa, Jun-ichi
Publicado 2020

Liquid-like droplet formation by tumor suppressor p53 induced by multivalent electrostatic interactions between two disordered domains

por Kamagata, Kiyoto, Kanbayashi, Saori, Honda, Masaya, Itoh, Yuji, Takahashi, Hiroto, Kameda, Tomoshi, Nagatsugi, Fumi, Takahashi, Satoshi
Publicado 2020

Structure-dependent recruitment and diffusion of guest proteins in liquid droplets of FUS

por Kamagata, Kiyoto, Iwaki, Nanako, Kanbayashi, Saori, Banerjee, Trishit, Chiba, Rika, Gaudon, Virginie, Castaing, Bertrand, Sakomoto, Seiji
Publicado 2022

Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo

por Kamagata, Kiyoto, Itoh, Yuji, Tan, Cheng, Mano, Eriko, Wu, Yining, Mandali, Sridhar, Takada, Shoji, Johnson, Reid C
Publicado 2021

Rational design using sequence information only produces a peptide that binds to the intrinsically disordered region of p53

por Kamagata, Kiyoto, Mano, Eriko, Itoh, Yuji, Wakamoto, Takuro, Kitahara, Ryo, Kanbayashi, Saori, Takahashi, Hiroto, Murata, Agato, Kameda, Tomoshi
Publicado 2019

Rational peptide design for regulating liquid–liquid phase separation on the basis of residue–residue contact energy

por Kamagata, Kiyoto, Ariefai, Maulana, Takahashi, Hiroto, Hando, Atsumi, Subekti, Dwiky Rendra Graha, Ikeda, Keisuke, Hirano, Atsushi, Kameda, Tomoshi
Publicado 2022

The HMGB chromatin protein Nhp6A can bypass obstacles when traveling on DNA

por Kamagata, Kiyoto, Ouchi, Kana, Tan, Cheng, Mano, Eriko, Mandali, Sridhar, Wu, Yining, Takada, Shoji, Takahashi, Satoshi, Johnson, Reid C
Publicado 2020

Characterization of design grammar of peptides for regulating liquid droplets and aggregates of FUS

por Kamagata, Kiyoto, Chiba, Rika, Kawahata, Ichiro, Iwaki, Nanako, Kanbayashi, Saori, Maeda, Kana, Takahashi, Hiroto, Hirano, Atsushi, Fukunaga, Koji, Ikeda, Keisuke, Kameda, Tomoshi
Publicado 2021

A synthetic ion channel with anisotropic ligand response

por Muraoka, Takahiro, Noguchi, Daiki, Kasai, Rinshi S., Sato, Kohei, Sasaki, Ryo, Tabata, Kazuhito V., Ekimoto, Toru, Ikeguchi, Mitsunori, Kamagata, Kiyoto, Hoshino, Norihisa, Noji, Hiroyuki, Akutagawa, Tomoyuki, Ichimura, Kazuaki, Kinbara, Kazushi
Publicado 2020

Molecular principles of recruitment and dynamics of guest proteins in liquid droplets

por Kamagata, Kiyoto, Iwaki, Nanako, Hazra, Milan Kumar, Kanbayashi, Saori, Banerjee, Trishit, Chiba, Rika, Sakomoto, Seiji, Gaudon, Virginie, Castaing, Bertrand, Takahashi, Hiroto, Kimura, Michiko, Oikawa, Hiroyuki, Takahashi, Satoshi, Levy, Yaakov
Publicado 2021