POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets

por Kankainen, Matti, Holm, Liisa
Publicado 2005

MATLIGN: a motif clustering, comparison and matching tool

por Kankainen, Matti, Löytynoja, Ari
Publicado 2007

BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins

por Kankainen, Matti, Ojala, Teija, Holm, Liisa
Publicado 2012

Adhesive polypeptides of Staphylococcus aureus identified using a novel secretion library technique in Escherichia coli

por Kylväjä, Riikka, Kankainen, Matti, Holm, Liisa, Westerlund-Wikström, Benita
Publicado 2011

Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple Myeloma

por Kumar, Ashwini, Adhikari, Sadiksha, Kankainen, Matti, Heckman, Caroline A.
Publicado 2021

Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana

por Kankainen, Matti, Brader, Günter, Törönen, Petri, Palva, E. Tapio, Holm, Liisa
Publicado 2006

Exome Sequencing Identifies Susceptibility Loci for Sarcoidosis Prognosis

por Lahtela, Elisa, Kankainen, Matti, Sinisalo, Juha, Selroos, Olof, Lokki, Marja-Liisa
Publicado 2019

A novel partial de novo duplication of JARID2 gene causing a neurodevelopmental phenotype

por Viitasalo, Liisa, Kettunen, Kaisa, Kankainen, Matti, Niemelä, Elina H., Kiiski, Kirsi
Publicado 2022

POXO: a web-enabled tool series to discover transcription factor binding sites

por Kankainen, Matti, Pehkonen, Petri, Rosenstöm, Päivi, Törönen, Petri, Wong, Garry, Holm, Liisa
Publicado 2006

Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae

por Salusjärvi, Laura, Kankainen, Matti, Soliymani, Rabah, Pitkänen, Juha-Pekka, Penttilä, Merja, Ruohonen, Laura
Publicado 2008

The impact of RNA sequence library construction protocols on transcriptomic profiling of leukemia

por Kumar, Ashwini, Kankainen, Matti, Parsons, Alun, Kallioniemi, Olli, Mattila, Pirkko, Heckman, Caroline A.
Publicado 2017

Pseudoexons provide a mechanism for allele-specific expression of APC in familial adenomatous polyposis

por Nieminen, Taina T., Pavicic, Walter, Porkka, Noora, Kankainen, Matti, Järvinen, Heikki J., Lepistö, Anna, Peltomäki, Päivi
Publicado 2016

Association of tamoxifen resistance and lipid reprogramming in breast cancer

por Hultsch, Susanne, Kankainen, Matti, Paavolainen, Lassi, Kovanen, Ruusu-Maaria, Ikonen, Elina, Kangaspeska, Sara, Pietiäinen, Vilja, Kallioniemi, Olli
Publicado 2018

Somatic STAT3 mutations in CD8(+) T cells of healthy blood donors carrying human T-cell leukemia virus type 2

por Kim, Daehong, Myllymäki, Mikko, Kankainen, Matti, Järvinen, Timo, Park, Giljun, Bruhn, Roberta, Murphy, Edward L., Mustjoki, Satu
Publicado 2021

Cancer-Associated Fibroblasts Modulate Transcriptional Signatures Involved in Proliferation, Differentiation and Metastasis in Head and Neck Squamous Cell Carcinoma

por Wiechec, Emilia, Magan, Mustafa, Matic, Natasa, Ansell-Schultz, Anna, Kankainen, Matti, Monni, Outi, Johansson, Ann-Charlotte, Roberg, Karin
Publicado 2021

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis

por Ojala, Teija, Kankainen, Matti, Castro, Joana, Cerca, Nuno, Edelman, Sanna, Westerlund-Wikström, Benita, Paulin, Lars, Holm, Liisa, Auvinen, Petri
Publicado 2014

STAT3 activation in large granular lymphocyte leukemia is associated with cytokine signaling and DNA hypermethylation

por Kim, Daehong, Park, Giljun, Huuhtanen, Jani, Ghimire, Bishwa, Rajala, Hanna, Moriggl, Richard, Chan, Wing C., Kankainen, Matti, Myllymäki, Mikko, Mustjoki, Satu
Publicado 2021

Genome-Wide Analysis of Evolutionary Markers of Human Influenza A(H1N1)pdm09 and A(H3N2) Viruses May Guide Selection of Vaccine Strain Candidates

por Belanov, Sergei S., Bychkov, Dmitrii, Benner, Christian, Ripatti, Samuli, Ojala, Teija, Kankainen, Matti, Kai Lee, Hong, Wei-Tze Tang, Julian, Kainov, Denis E.
Publicado 2015

Interleukin 8 activity influences the efficacy of adenoviral oncolytic immunotherapy in cancer patients

por Taipale, Kristian, Tähtinen, Siri, Havunen, Riikka, Koski, Anniina, Liikanen, Ilkka, Pakarinen, Päivi, Koivisto-Korander, Riitta, Kankainen, Matti, Joensuu, Timo, Kanerva, Anna, Hemminki, Akseli
Publicado 2018

CD73 contributes to anti‐inflammatory properties of afferent lymphatic endothelial cells in humans and mice

por Eichin, Dominik, Pessia, Alberto, Takeda, Akira, Laakkonen, Joni, Bellmann, Lydia, Kankainen, Matti, Imhof, Beat A., Stoitzner, Patrizia, Tang, Jing, Salmi, Marko, Jalkanen, Sirpa
Publicado 2020