A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains

por Makarova, Kira S., Wolf, Yuri I., Karamycheva, Svetlana, Koonin, Eugene V.
Publicado 2021

Compensatory relationship between low-complexity regions and gene paralogy in the evolution of prokaryotes

por Persi, Erez, Wolf, Yuri I., Karamycheva, Svetlana, Makarova, Kira S., Koonin, Eugene V.
Publicado 2023

Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

por Karamycheva, Svetlana, Wolf, Yuri I., Persi, Erez, Koonin, Eugene V., Makarova, Kira S.
Publicado 2022

Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts

por Makarova, Kira S., Wolf, Yuri I., Karamycheva, Svetlana, Zhang, Dapeng, Aravind, L., Koonin, Eugene V.
Publicado 2019

Unidirectional gene pairs in archaea and bacteria require overlaps or very short intergenic distances for translational coupling via termination-reinitiation and often encode subun...

por Huber, Madeleine, Vogel, Nico, Borst, Andreas, Pfeiffer, Friedhelm, Karamycheva, Svetlana, Wolf, Yuri I., Koonin, Eugene V., Soppa, Jörg
Publicado 2023

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes

por Lee, Y., Tsai, J., Sunkara, S., Karamycheva, S., Pertea, G., Sultana, R., Antonescu, V., Chan, A., Cheung, F., Quackenbush, J.
Publicado 2005

RESOURCERER: a database for annotating and linking microarray resources within and across species

por Tsai, Jennifer, Sultana, Razvan, Lee, Yudan, Pertea, Geo, Karamycheva, Svetlana, Antonescu, Valentin, Cho, Jennifer, Parvizi, Babak, Cheung, Foo, Quackenbush, John
Publicado 2001

Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis

por Makarova, Kira S., Blackburne, Brittney, Wolf, Yuri I., Nikolskaya, Anastasia, Karamycheva, Svetlana, Espinoza, Marlene, Barry, Clifton E., Bewley, Carole A., Koonin, Eugene V.
Publicado 2022

Monitoring the Long-Term Molecular Epidemiology of the Pneumococcus and Detection of Potential ‘Vaccine Escape’ Strains

por Pandya, Gagan A., McEllistrem, M. Catherine, Venepally, Pratap, Holmes, Michael H., Jarrahi, Behnam, Sanka, Ravi, Liu, Jia, Karamycheva, Svetlana A., Bai, Yun, Fleischmann, Robert D., Peterson, Scott N.
Publicado 2011

Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay

por Pandya, Gagan A, Holmes, Michael H, Petersen, Jeannine M, Pradhan, Sonal, Karamycheva, Svetlana A, Wolcott, Mark J, Molins, Claudia, Jones, Marcus, Schriefer, Martin E, Fleischmann, Robert D, Peterson, Scott N
Publicado 2009

Araport: the Arabidopsis Information Portal

por Krishnakumar, Vivek, Hanlon, Matthew R., Contrino, Sergio, Ferlanti, Erik S., Karamycheva, Svetlana, Kim, Maria, Rosen, Benjamin D., Cheng, Chia-Yi, Moreira, Walter, Mock, Stephen A., Stubbs, Joseph, Sullivan, Julie M., Krampis, Konstantinos, Miller, Jason R., Micklem, Gos, Vaughn, Matthew, Town, Christopher D.
Publicado 2014

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

por Lorenzi, Hernan, Khan, Asis, Behnke, Michael S., Namasivayam, Sivaranjani, Swapna, Lakshmipuram S., Hadjithomas, Michalis, Karamycheva, Svetlana, Pinney, Deborah, Brunk, Brian P., Ajioka, James W., Ajzenberg, Daniel, Boothroyd, John C., Boyle, Jon P., Dardé, Marie L., Diaz-Miranda, Maria A., Dubey, Jitender P., Fritz, Heather M., Gennari, Solange M., Gregory, Brian D., Kim, Kami, Saeij, Jeroen P. J., Su, Chunlei, White, Michael W., Zhu, Xing-Quan, Howe, Daniel K., Rosenthal, Benjamin M., Grigg, Michael E., Parkinson, John, Liu, Liang, Kissinger, Jessica C., Roos, David S., David Sibley, L
Publicado 2016