Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data

por Loher, Phillipe, Karathanasis, Nestoras
Publicado 2021

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology

por Karathanasis, Nestoras, Tsamardinos, Ioannis, Poirazi, Panayiota
Publicado 2015

omicsNPC: Applying the Non-Parametric Combination Methodology to the Integrative Analysis of Heterogeneous Omics Data

por Karathanasis, Nestoras, Tsamardinos, Ioannis, Lagani, Vincenzo
Publicado 2016

IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets

por Loher, Phillipe, Karathanasis, Nestoras, Londin, Eric, F. Bray, Paul, Pliatsika, Venetia, Telonis, Aristeidis G., Rigoutsos, Isidore
Publicado 2021

Reproducibility efforts as a teaching tool: A pilot study

por Karathanasis, Nestoras, Hwang, Daniel, Heng, Vibol, Abhimannyu, Rimal, Slogoff-Sevilla, Phillip, Buchel, Gina, Frisbie, Victoria, Li, Peiyao, Kryoneriti, Dafni, Rigoutsos, Isidore
Publicado 2022

Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression

por Ewing, Ewoud, Kular, Lara, Fernandes, Sunjay J., Karathanasis, Nestoras, Lagani, Vincenzo, Ruhrmann, Sabrina, Tsamardinos, Ioannis, Tegner, Jesper, Piehl, Fredrik, Gomez-Cabrero, David, Jagodic, Maja
Publicado 2019

STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline

por Planell, Nuria, Lagani, Vincenzo, Sebastian-Leon, Patricia, van der Kloet, Frans, Ewing, Ewoud, Karathanasis, Nestoras, Urdangarin, Arantxa, Arozarena, Imanol, Jagodic, Maja, Tsamardinos, Ioannis, Tarazona, Sonia, Conesa, Ana, Tegner, Jesper, Gomez-Cabrero, David
Publicado 2021

Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients

por Fernandes, Sunjay Jude, Morikawa, Hiromasa, Ewing, Ewoud, Ruhrmann, Sabrina, Joshi, Rubin Narayan, Lagani, Vincenzo, Karathanasis, Nestoras, Khademi, Mohsen, Planell, Nuria, Schmidt, Angelika, Tsamardinos, Ioannis, Olsson, Tomas, Piehl, Fredrik, Kockum, Ingrid, Jagodic, Maja, Tegnér, Jesper, Gomez-Cabrero, David
Publicado 2019

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data

por Tanevski, Jovan, Nguyen, Thin, Truong, Buu, Karaiskos, Nikos, Ahsen, Mehmet Eren, Zhang, Xinyu, Shu, Chang, Xu, Ke, Liang, Xiaoyu, Hu, Ying, Pham, Hoang VV, Xiaomei, Li, Le, Thuc D, Tarca, Adi L, Bhatti, Gaurav, Romero, Roberto, Karathanasis, Nestoras, Loher, Phillipe, Chen, Yang, Ouyang, Zhengqing, Mao, Disheng, Zhang, Yuping, Zand, Maryam, Ruan, Jianhua, Hafemeister, Christoph, Qiu, Peng, Tran, Duc, Nguyen, Tin, Gabor, Attila, Yu, Thomas, Guinney, Justin, Glaab, Enrico, Krause, Roland, Banda, Peter, Stolovitzky, Gustavo, Rajewsky, Nikolaus, Saez-Rodriguez, Julio, Meyer, Pablo
Publicado 2020